Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq781 82.4 9e-11 >seq781 Length=476855 Score = 82.4 bits (90), Expect = 9e-11 Identities = 194/288 (67%), Gaps = 14/288 (5%) Strand=Plus/Minus Query 10790 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 10849 |||||||| ||||| | | | ||| |||||| || || | ||| || || || Sbjct 28828 TCAAAGCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCAGCA 28769 Query 10850 ATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 | |||| ||| || || |||| |||||||||||||||||||| | || ||||| Sbjct 28768 ACAACAATGATACCAGT---GTTACCCTCAAAGCCATCCATCTCAGTTAGAAGCTGATTC 28712 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGC---ATACCACCCGCACTGCGTTGCTTACCG 10963 | || ||||| | ||||||||| | | || ||| | || | |||| | || Sbjct 28711 AATGTCTGTTCCCTTTCATCATTTCCTCCCCCGATTCCA---GTACCTCTTTGCCTTCCT 28655 Query 10964 ACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGGGCAACTTCAAA 11022 || || ||||||||||| | || || || || || |||||| | | ||| ||| Sbjct 28654 ACTGCATCAATTTCATCAACAAACACAATGCAAGGAGCATTTTCTTTTGCCTTCTTGAAA 28595 Query 11023 GATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAA 11070 | ||| || |||| || || ||||| ||||||||||| ||||| Sbjct 28594 -AGATCGCGCACTCGAGATGCTCCCACACCAACAAACATTTCAACAAA 28548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597331102170040