Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq2360 122 9e-23 seq1925 120 3e-22 seq2306 100 3e-16 seq2371 98.7 1e-15 seq2770 89.7 6e-13 seq1558 86.0 7e-12 >seq2360 Length=898569 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | || || || | |||| ||||||||| || ||||| || || Sbjct 280530 ACCACCCCTCAGACGGAGGACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGC 280471 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| | | ||||| | ||||||||||||||| ||||| | ||||||||| | ||| Sbjct 280470 TAGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGG 280411 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | |||||| | | ||| |||| || |||| || | | ||||| | || | Sbjct 280410 TATACCCTCCTTAT-CTTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGA 280352 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 280351 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 280303 Score = 113 bits (124), Expect = 5e-20 Identities = 166/231 (72%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| || || | ||| | |||||||| ||||| || ||||||||||||||| Sbjct 280985 CCTCCTCTCAACCGGAGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGCC 280926 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||||| | ||||| | |||||| || || || || || | ||||||||| | ||| Sbjct 280925 AATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 280866 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCG-TCGCCACCGTGTC---GCTCGATTC 42157 | | ||| |||||| ||| | ||||| | | || | | | ||||| ||| ||| Sbjct 280865 ATTCCCTCTTTGTCC-TGAATCTTTGTCTTAACGATATCGATAGTGTCAGAGCT---TTC 280810 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||||||||| || || || ||||| || || || ||||| Sbjct 280809 GACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCAT 280759 Score = 107 bits (118), Expect = 2e-18 Identities = 165/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | || | |||||||||| || |||||||| || ||||||||||| Sbjct 281214 ACCACCTCTGAGGCGGAGGACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGC 281155 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || ||||| | || || |||||||| ||||| || || | | ||||||||| | ||| Sbjct 281154 CAAAGTCCTGCCATCCTCCAGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGG 281095 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTC 42157 | || |||||| | | ||| | || || | | | | || ||| | ||| ||| Sbjct 281094 AATGCCCTCCTTAT-CTTGAATCTTCGTCTTCACATTGTCA-ATTGTATC-CGAGCTTTC 281038 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | ||||| ||||| || || |||||||| |||||||||||||| Sbjct 281037 AACTTCTAGGGTGATAGTTTTCCCAGTAAGCGTCTTAACAAAGATTTGCAT 280987 >seq1925 Length=318408 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||||||||| | ||| | ||| | || |||||| ||||| ||||||||||| Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || ||| |||| || |||||||| ||||| || || |||| ||| ||||| | || Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || ||||||| | ||| |||| | ||||| | | | |||||| ||| || Sbjct 245491 ATGCCTTCCTTGT-CTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 245433 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| || || || || ||||| ||||| || ||||| Sbjct 245432 CTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 102 bits (112), Expect = 9e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||||||||| | |||||| || | ||| |||||||||||| ||||| || || Sbjct 245839 CCTCCTCTTAAACGAAGCACCAAGTGAAGTGTAGACTCCTTTTGAATGTTGTAGTCTGCA 245780 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || |||| | | || || |||||||| || || || || | || ||||| || | || Sbjct 245779 AGGGTCCTCCCATCCTCGAGCTGCTTCCCTGCAAAGATCAATCTTTGCTGATCTGGGGGA 245720 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTC 42157 | || |||||| ||| ||| | || | |||| | | | ||||| |||| || Sbjct 245719 ATGCCCTCCTTATCC-TGAATCTTAGCCTTGACATTGTCGATGGTGTCTGAGCTC---TC 245664 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || || | ||||| ||||| || || | ||||| || || ||||||||| Sbjct 245663 AACCTCCAAAGTGATAGTTTTCCCAGTCAAAGTCTTGACGAAAATTTGCATT 245612 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/209 (71%), Gaps = 9/209 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || |||||||| ||||| || || || | || || |||||||| ||||| || Sbjct 244892 CTCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAA 244833 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||||||||| | || | | |||||| | | ||| | || || | | | | Sbjct 244832 GATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTAT-CTTGAATCTTCGTCTTAACAT 244774 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| ||| || || |||| || |||||||| || || || |||| Sbjct 244773 TGTCGATGGTGTCAGAACTC---TCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCT 244717 Query 42193 TTACAAAGATTTGCATTTTCACGCCGAAT 42221 | || ||||||||||| | || | ||||| Sbjct 244716 TAACGAAGATTTGCATCTGCA-GACGAAT 244689 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| ||||| || |||| ||| ||| |||| || | |||||||||||| || Sbjct 246031 TCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAA 245972 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || | | ||||||||| | || | | ||||||||| || | || || |||| | Sbjct 245971 ATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCC-TGTATCTTAGTCTTGACATT 245913 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| |||| || || || | ||||||||||| || || | ||||| Sbjct 245912 ATCGATAGTGTCTGAGCTC---TCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTT 245856 Query 42194 TACAAAGATTTGCATT 42209 ||||| ||||||||| Sbjct 245855 AACAAATATTTGCATT 245840 >seq2306 Length=232912 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || ||||| | ||||||||| | ||| |||||| || || ||||| || ||| Sbjct 176787 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 176846 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | ||| || | || || ||||||||||||||||| || | | ||||||||| | || Sbjct 176847 AAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 176906 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| | || || | | | | | | | ||||| |||| || Sbjct 176907 ATACCTTCCTTGTCC-TGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTC---TC 176962 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || | || ||||| || || || || ||||| || || || ||||| Sbjct 176963 AACCTCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 100 bits (110), Expect = 3e-16 Identities = 157/221 (71%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | |||| |||||| || || ||||| ||||| || || ||| | Sbjct 177026 ACGGAGCACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCC 177085 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | | ||| ||||| | || | | |||||| Sbjct 177086 ATCTTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCCTT 177145 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCG 42168 ||| ||| | || | |||| | | | || ||| ||| || || |||| | Sbjct 177146 GTCT-TGAATCTTAGACTTGACATTGTCAATAGTATCGGAGCTC---TCGACTTCGAGGG 177201 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||||| || || || || ||||| ||||||||||||||| Sbjct 177202 TGATGGTCTTCCCAGTGAGAGTCTTGACAAAGATTTGCATT 177242 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| || || ||| | || || |||||||||||||| || Sbjct 176366 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAA 176425 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || | | ||||||||| | || | | |||||||||| ||| | || | || | Sbjct 176426 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCC-TGAATCTTAGCCTTTACAT 176484 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | || || |||| || || || | |||||||| ||||| || | |||| Sbjct 176485 TATCAATTGTATCCGAGCTC---TCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCT 176541 Query 42193 TTACAAAGATTTGCATT 42209 | ||||| || |||||| Sbjct 176542 TCACAAAAATCTGCATT 176558 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| ||||| ||||| || || || |||| || ||||| || || ||||| Sbjct 177506 CTCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAA 177565 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || | |||||||| | || | | |||||||| ||| || |||| | Sbjct 177566 GATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGTCTTGACATT 177625 Query 42137 CGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||||| ||| || || |||| |||||||| || || || || ||||| Sbjct 177626 GTCAATGGTGTCAGAACTC---TCAACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTT 177682 Query 42194 TACAAAGATTTGCAT 42208 |||||||||||||| Sbjct 177683 CACAAAGATTTGCAT 177697 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || || || | |||||| || | || ||||||||| ||||||||||| || Sbjct 176559 CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCA 176618 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | || || |||||||| || || || || | | ||||||||| | || Sbjct 176619 AGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 176678 Query 42102 ACGCTCTCCTTGTCCATGATTTTT 42125 | || ||||||||| ||| |||| Sbjct 176679 ATGCCTTCCTTGTCC-TGAATTTT 176701 >seq2371 Length=888473 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 42019 CCTTT-TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || |||||||| || ||||| || ||||| || |||||||| | ||||| Sbjct 99675 CCTTTCTGGATGTTGTAATC-GCTAGAGTACGGTCGTCTTCAAGCTGCTTTTCGGCGAAG 99617 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| ||| | || |||| | | | || || ||||| |||||| |||| ||| Sbjct 99616 ATGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGA-CGTT 99558 Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | | || || | ||| || || | ||||||||||| ||||| || || || || Sbjct 99557 GTTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCAC 99498 Query 42197 AAAGATTTGCATTTT 42211 ||| ||||||||||| Sbjct 99497 AAATATTTGCATTTT 99483 >seq2770 Length=737149 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/227 (70%), Gaps = 9/227 (4%) Strand=Plus/Plus Query 41987 TCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGT 42046 ||||||||||| |||||| | | || || |||||| ||||||||||| || || || Sbjct 636075 TCTTAAACGCAGCACCAAGTAAAGGGTAGACTACTTTTGGATATTGTAATCCGCAAGGGT 636134 Query 42047 CCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCT 42106 || | | ||||| |||||||| ||||| ||||| | | |||||||| || | | Sbjct 636135 CCTCCCATCATCAAGCTGCTTCCCAGCAAATATCAACCTTTGCTGGTCCAGGGGAATACC 636194 Query 42107 CTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACAT 42162 ||||| ||| ||| | || | ||||| | | | |||||| |||| || || | Sbjct 636195 TTCCTTATCC-TGAATCTTGGCTTTGACATTATCAATCGTGTCTGAGCTC---TCAACCT 636250 Query 42163 CGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | | || || || || || || | ||||| ||||| ||||||||| Sbjct 636251 CCAAAGTTATAGTCTTCCCTGTCA-AGTCTTAACAAAAATTTGCATT 636296 >seq1558 Length=1070493 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| || || | ||| | ||||| || | || |||||| || || ||||| || || Sbjct 239379 ACCACCCCTGAGACGAAGCACCAGGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 239320 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || ||||| || || ||||| ||||| ||||||||||| | || Sbjct 239319 GAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGG 239260 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||||| ||| || || | | | | ||||| ||||| || Sbjct 239259 GATGCCTTCCTTGTCTTGGATCTTAGTCTTCACATTGTCGATGGTGTCTGAGGATTCAAC 239200 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTC 42212 || | || || ||||| || ||||| || || || || || ||||| ||| Sbjct 239199 CTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTTCACGAATATCTGCATCTTC 239148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543192341247920