Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1925 116 4e-21 seq1558 105 7e-18 seq2306 102 8e-17 seq958 102 8e-17 seq758 96.9 3e-15 seq2360 93.3 4e-14 seq2448 84.2 2e-11 >seq1925 Length=318408 Score = 116 bits (128), Expect = 4e-21 Identities = 166/230 (72%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||| | || | ||| | | |||||||||| ||||||||||| || Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||| || || || || | | |||| || | ||||||||| || || Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| |||| ||||| | |||| | | |||||||| || | Sbjct 245491 ATGCCTTCCTTGTCT-TGAATTTTGGTTTTGACATTGT-CAATGGTGTCGGAGCTTTCAA 245434 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || || ||||| || || || ||||||||||||||| Sbjct 245433 CCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCATG 245384 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||||| | ||| | || | | | |||||||| || |||||||| || Sbjct 245156 GCCACCTCTTAAACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGC 245097 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || ||||| || || | | |||| | | ||| ||||| || || Sbjct 245096 AAGAGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGG 245037 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 |||||||| ||||| ||| |||| ||||| | |||| | | |||||| | ||| Sbjct 245036 AATACCTTCCTTGTCT-TGAATTTTGGTTTTGACATTGT-CAATGGTGTCAGAATTCTCG 244979 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | || || ||||| || || || |||||||||||||| Sbjct 244978 ACCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 244929 >seq1558 Length=1070493 Score = 105 bits (116), Expect = 7e-18 Identities = 142/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||| || || ||||| |||| Sbjct 239345 GACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGTTTTCCGGCG 239286 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTTAA 138539 |||| |||||||| ||||| ||||| || ||||| ||||| ||| || | || | Sbjct 239285 AAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTAGTCTTCACA 239226 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | || || ||||| | || | ||||| ||||| || ||||| Sbjct 239225 TTG-TCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTTAGGGTTTT 239167 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 239166 CACGAATATCTGCAT 239152 >seq2306 Length=232912 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | |||||| | || ||||| | | |||||||| || |||||||||||| | Sbjct 176787 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 176846 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| |||||||| || ||||| | | || | | ||| ||||| || || Sbjct 176847 AAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 176906 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || || ||| |||| || | |||||||| ||| | Sbjct 176907 ATACCTTCCTTGTC-CTGAATCTTCGTCTTAACATTG-TCAATGGTGTCGGAGCTCTCAA 176964 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || || ||||||||||| Sbjct 176965 CCTCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/198 (72%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 ||||||||||||||||||||||||| ||| | || || |||||| || ||||| ||| Sbjct 177502 TTGACTCCTTTTGAATGTTGTAGTCAGCT-AGGGTTCGGCCGTCCTCCAGCTGTTTTCCG 177560 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTT 138536 | |||| || | || ||||| || || || ||||| ||||| ||| || | || Sbjct 177561 GCGAAGATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGTCTTG 177620 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | |||||| | ||| ||||||| || | || || ||||| || || Sbjct 177621 ACATTG-TCAATGGTGTCAGAACTCTCAACCTCGAGAGTGATGGTCTTTCCAGTAAGGGT 177679 Query 138597 TTTTACAAAAATCTGCAT 138614 || ||||| || ||||| Sbjct 177680 CTTCACAAAGATTTGCAT 177697 >seq958 Length=433838 Score = 102 bits (112), Expect = 8e-17 Identities = 141/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||||||| | ||| || || ||||| ||||| |||| Sbjct 311936 GATTCCTTCTGAATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGTTTTCCGGCG 311995 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| ||||| |||||||| || || || ||||||||||| ||| || ||| | | Sbjct 311996 AAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTGGCTTTGACA 312055 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||| || | || || || || | || | |||||||| || || ||||| Sbjct 312056 TTG-TCGATGGTATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTTAGGGTTTT 312114 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 312115 CACGAAGATCTGCAT 312129 >seq758 Length=475707 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| || |||||||||||| | ||| || ||| ||||| || || |||| Sbjct 367610 GATTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGCTTTCCGGCG 367669 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || || || |||||||| || || || ||||||||||| ||| ||| ||| | | Sbjct 367670 AAAATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTTGCTTTGACA 367729 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | || || ||||| | || | |||||||| || || ||||| Sbjct 367730 TTG-TCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGTTAGGGTTTT 367788 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 367789 CACGAAGATCTGCAT 367803 >seq2360 Length=898569 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||| | ||||| || | | ||||||||||| |||||||||||| Sbjct 280529 CCACCCCTCAGACGGAGGACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 280470 Query 138448 ATAGTAC-GCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| | || | || || | || ||||| | |||| || | ||| |||||||| || Sbjct 280469 AGAGTTCTGCCA-TCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGG 280411 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGT-TTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||| || || || ||| |||| || || | | || | ||||| | | ||| | Sbjct 280410 TATACCCTCCTTATC-TTGAATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGA 280352 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || |||||||| ||||| ||||| || ||||| Sbjct 280351 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCAT 280303 >seq2448 Length=870776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||||||||| || | || | || || | |||||| || | | Sbjct 350488 GATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCA 350429 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||||| || ||||| || || || || ||||||||||| ||| || ||| | | Sbjct 350428 AAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGATTTTGACA 350369 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | ||||||| || || || || | || | ||||||||||| || ||||| Sbjct 350368 TTGT-CGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTTTACCAGTTAGGGTTTT 350310 Query 138600 TACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 350309 CACGAAAATCTGCAT 350295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496243709517360