Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2448 131 1e-25 seq2371 114 9e-21 seq1925 107 1e-18 seq2306 89.7 4e-13 seq958 89.7 4e-13 seq758 89.7 4e-13 seq1558 87.8 1e-12 seq2770 86.0 4e-12 seq2360 84.2 2e-11 >seq2448 Length=870776 Score = 131 bits (144), Expect = 1e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| || || || || || ||||||||||| || |||| | ||||| Sbjct 350503 ACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCC 350444 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| ||||| | || || || ||||| || ||| || ||||| ||||| Sbjct 350443 AATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGG 350384 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| |||| ||| | || || || ||| ||| || |||||||| ||||||||| Sbjct 350383 ATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTTTA 350324 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182 || || || ||||| || ||||| ||||||||||| Sbjct 350323 CCAGTTAGGGTTTTCACGAAAATCTGCATATTTGA 350289 >seq2371 Length=888473 Score = 114 bits (126), Expect = 9e-21 Identities = 145/198 (73%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 14984 AATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGT 15043 || |||| || |||||||||||||| ||| | | ||||||| | || || | ||| Sbjct 99677 AACCTTTCTGGATGTTGTAATCGCT-AGAGTACGGTCGTCTTCAAGCTGCTTTTCGGCGA 99619 Query 15044 ATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAA 15103 | || | |||| |||| ||| | |||| ||||| |||||| ||||| || || Sbjct 99618 AGATGAGACGCAGTTGATCGGGTTGAATGCCTTCTTTGTCATGGATTTTAGCCTTGACGT 99559 Query 15104 TTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTA 15163 | | || ||||| ||| |||| || || | ||| ||||||||||| || |||||||| | Sbjct 99558 TGTTAATGGTATCACTAGTTTCAACCTCAAGGGTGATGGTTTTACCCGTAAGAGTTTTCA 99499 Query 15164 CAAAAATTTGCATATTTG 15181 |||| |||||||| |||| Sbjct 99498 CAAATATTTGCATTTTTG 99481 >seq1925 Length=318408 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | ||| | || ||||| || || || || ||||||||||| Sbjct 245157 TGCCACCTCTTAAACGAAGAACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAG 245098 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | ||||| | ||| || ||||| | ||||| | ||| ||||| | Sbjct 245097 CAAGAGTGCGGCCATCTTCAAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGG 245038 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| ||||||| |||| ||| | || || || || ||| || | Sbjct 245037 GAATACCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCAGAATTCTCGA 244978 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || || || |||||||| ||||| Sbjct 244977 CCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 244929 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| || | | || | ||| ||||| || || || || ||||||||||| Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | |||| || | || || ||||| | |||| | ||||||||| ||| Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| ||||||| |||| ||| | || || || ||| |||| || Sbjct 245491 ATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACC 245432 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || || || || || || |||||||| ||||| Sbjct 245431 TCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || |||||||| || | | | | | |||| || || || Sbjct 246043 TGAAGGGTGGATTCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGC 245984 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||| ||||| ||||||||||||||||| || || Sbjct 245983 TTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTA 245924 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || ||||| || | || || || ||||| |||||||| || ||| Sbjct 245923 GTCTTGACATTATCGATAGTGTCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTC 245864 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | || || ||||| |||||||| Sbjct 245863 AAGGTCTTAACAAATATTTGCAT 245841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| | | | ||| | || ||||| || ||||| || ||||||||||| Sbjct 245385 TGCCACCTCTAAGACGGAGAACCAGGTGGAGGGTCGACTCTTTCTGGATGTTGTAATCAG 245326 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| | | | || || | ||||| || || | ||||| | ||| || || | Sbjct 245325 CAAGAGTGCGGCCATCCTCAAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCTGGGG 245266 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| ||||||||||| |||||| |||| ||| | || || ||||| |||| | Sbjct 245265 GAATACCTTCCTTGTCTTGGATTTTGGTTTTAACATTGTCAATTGTATCAGAGCTTTCAA 245206 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| || || || || || || || || ||||| || ||||| Sbjct 245205 CCTCAAGGGTGATAGTCTTCCCAGTGAGGGTCTTAACAAAGATCTGCAT 245157 >seq2306 Length=232912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || || | ||||| | || || |||||||| || || ||||| || |||||||| Sbjct 176559 CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCA 176618 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | || | ||||| | || ||||| || | ||||| | ||| ||||| || Sbjct 176619 AGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 176678 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| |||||| || ||| | || || || || | | || || Sbjct 176679 ATGCCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAACC 176738 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||||||||| || || |||| || || || ||||| ||||| Sbjct 176739 TCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| || || || || || || |||||||| ||| | | | | | || || Sbjct 176805 ACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTACGACCATCCTCG 176864 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || |||||| | ||||| | ||| ||||| ||||| ||||||||||| | Sbjct 176865 AGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCCTGA 176924 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || | || ||| | || || || ||| | || || || || |||||||| || Sbjct 176925 ATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAACCTCCAAAGTAATGGTCTTC 176984 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || || || ||||| |||||| Sbjct 176985 CCGGTAAGGGTCTTGACGAAAATCTGCATA 177014 >seq958 Length=433838 Score = 89.7 bits (98), Expect = 4e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||| ||| | | | | | ||||| | ||| Sbjct 311927 TGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCGAGCTGT 311986 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | ||| |||||||| ||| || ||||| ||||| || ||| Sbjct 311987 TTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGGATCTTG 312046 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || ||||| ||| || |||| ||| ||||||||||| || Sbjct 312047 GCTTTGACATTGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTATGGTTTTACCCGTT 312106 Query 15154 AGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 312107 AGGGTTTTCACGAAGATCTGCATTTTT 312133 >seq758 Length=475707 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || || || |||||||| ||| | | | | ||||||| | || Sbjct 367601 TGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCTAAAGTGCGGCCGTCTTCGAGCTGC 367660 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || ||| | || | || |||||||| ||| |||||||| ||||| || ||| Sbjct 367661 TTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCTTGGATCTTT 367720 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 ||||| ||| | || || || || |||||| |||| ||| ||||||||||| || Sbjct 367721 GCTTTG-ACATTGTCGATTGTGTCCGAGGATTCTACCTCTAGGGTTATGGTTTTACCCGT 367779 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| || || || ||||| ||| Sbjct 367780 TAGGGTTTTCACGAAGATCTGCATTTTT 367807 >seq1558 Length=1070493 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || |||||||| ||| |||| | | ||||||| | ||| Sbjct 239354 TGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCAAGCTGT 239295 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | || | |||||| ||||| || || ||||||||||| || || Sbjct 239294 TTTCCGGCGAAGATGAGACGCTGCTGGTCTGGAGGGATGCCTTCCTTGTCTTGGATCTTA 239235 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 | || ||| | || || || || ||| || |||| ||| || ||||| || || Sbjct 239234 GTCTTCACATTGTCGATGGTGTCTGAGGATTCAACCTCTAGGGTTATTGTTTTCCCAGTT 239175 Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179 || ||||| || || || ||||| || Sbjct 239174 AGGGTTTTCACGAATATCTGCATCTT 239149 >seq2770 Length=737149 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || | ||||||||| | ||||| || |||||||| || | ||| | || || Sbjct 636088 ACCAAGTAAAGGGTAGACTACTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCATCA 636147 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| ||||||| | || ||||| ||||| |||||||| || | Sbjct 636148 AGCTGCTTCCCAGCAAATATCAACCTTTGCTGGTCCAGGGGAATACCTTCCTTATCCTGA 636207 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| ||| ||| | || || || || | || || || || || || || || Sbjct 636208 ATCTTGGCTTTGACATTATCAATCGTGTCTGAGCTCTCAACCTCCAAAGTTATAGTCTTC 636267 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||||| ||| || |||||||||||||| Sbjct 636268 CCTGTCA-AGTCTTAACAAAAATTTGCAT 636295 >seq2360 Length=898569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| ||||| || || ||||| ||||||||||| | | | || | || || Sbjct 281195 ACCAAATGCAGGGTTGATTCCTTTTGGATGTTGTAATCAGCCAAAGTCCTGCCATCCTCC 281136 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || || ||||| | || | | ||| ||||| |||||| || ||||| || | Sbjct 281135 AGCTGCTTCCCAGCAAAGATAATCCTCTGCTGGTCAGGTGGAATGCCCTCCTTATCTTGA 281076 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || | || ||| | || || ||||| |||| || |||| ||| || ||||| Sbjct 281075 ATCTTCGTCTTCACATTGTCAATTGTATCCGAGCTTTCAACTTCTAGGGTGATAGTTTTC 281016 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 281015 CCAGTAAGCGTCTTAACAAAGATTTGCAT 280987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357378876230705