Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2448 109 5e-19 seq2770 107 2e-18 seq2306 107 2e-18 seq2360 104 2e-17 seq1925 104 2e-17 seq958 84.2 2e-11 >seq2448 Length=870776 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| ||||| |||||||| || || || ||||| | ||| | ||| || Sbjct 350504 CACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTC 350445 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||||||| || || | || || ||||| || || || || ||||||||||| ||||| Sbjct 350444 CAATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTG 350385 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || || ||||| || | |||||||| || ||||| || | || | ||||| Sbjct 350384 GATCTTGATTTTGACATTGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGTTTT 350325 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || ||||| ||||| Sbjct 350324 ACCAGTTAGGGTTTTCACGAAAATCTGCAT 350295 >seq2770 Length=737149 Score = 107 bits (118), Expect = 2e-18 Identities = 143/196 (73%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 45147 GATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCG 45206 || ||||| ||||| ||||||| | |||| || || | |||||||| ||| Sbjct 636530 GACTCCTTCTGGATGCTATAATCCGCAAGGGTTCGGCCATTCTCAAGCTGTTTTCCAGCG 636589 Query 45207 TATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATC 45266 | |||| || ||||| || || ||||| || ||||||||||||||||| || | | | Sbjct 636590 AAGATCAGACGCTGCTGATCTGGGGGAATCCCCTCTTTATCTTGAATTTTG-GTCTTAAC 636648 Query 45267 GCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTT 45325 | || | || || ||| |||||| |||||||| | | |||||| ||||| ||||| Sbjct 636649 ATTATCAATTGTATCAGAACTCTCGACCTCGAGAGTCATGGATTTGCCAGTTAGGGTTTT 636708 Query 45326 TACAAAAATTTGCATC 45341 ||||||||||||||| Sbjct 636709 GACAAAAATTTGCATC 636724 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/200 (70%), Gaps = 1/200 (1%) Strand=Plus/Plus Query 45141 AGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTT 45200 || || || | |||||||||||| ||||| | ||| | ||| || | || || Sbjct 636097 AGGGTAGACTACTTTTGGATATTGTAATCCGCAAGGGTCCTCCCATCATCAAGCTGCTTC 636156 Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || || ||||||| | |||||||||| | ||||| ||||| ||||| ||||| || | Sbjct 636157 CCAGCAAATATCAACCTTTGCTGGTCCAGGGGAATACCTTCCTTATCCTGAATCTTGGCT 636216 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | ||||| || ||| || || | ||| | || || || || | | Sbjct 636217 TTGACATTATCAATCGTGTCTGAGCTCTCAACCTCCAAAGTTATAGTCTTCCCTGTCA-A 636275 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || |||||||||||||| Sbjct 636276 GTCTTAACAAAAATTTGCAT 636295 >seq2306 Length=232912 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | || | | ||| || || || ||||| ||||| ||||| || || || Sbjct 177240 ATTCCTCCCCTAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCA 177299 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || |||| ||| || | || ||||| ||| | |||| | ||||||||| || Sbjct 177300 GCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAGCCTTTGCTGGTCTGGG 177359 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || ||||||||||| |||| || | || | ||||||||| || Sbjct 177360 GGAATTCCCTCCTTGTCTTGAATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTC 177418 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| || | || || || ||||| ||||| ||||| || ||||| Sbjct 177419 CACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACAAAGATCTGCAT 177469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || ||||| |||||||||||||| ||||| | || | ||| |||| || Sbjct 176583 TGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCAAGAGTCCTTCCATCTTCCAGCTGC 176642 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| | |||||||| || || |||||||| || || |||||||| Sbjct 176643 TTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGAATTTTC 176702 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| ||| ||| || || || |||| || || ||||| Sbjct 176703 GCCTTGACATTGTCGATGGTGTCCGAACTCTCAACCTCCAGGGTAATGGTCTTTCCGGTC 176762 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | || || || ||||| ||||| Sbjct 176763 AAGGTCTTGACGAAAATCTGCAT 176785 >seq2360 Length=898569 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 |||| || || || || ||||||||||| || || ||| | ||| | ||| ||| Sbjct 280511 ACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCTAGAGTTCTGCCATCATCC 280452 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 || || || || ||| | || | | ||||||||||| || || || || ||||||||| Sbjct 280451 AACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGTATACCCTCCTTATCTTGA 280392 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| |||| || | ||||| || | |||||| ||||| || | || ||| Sbjct 280391 ATTTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGACCTCGAGGGTGATGGTCTTG 280332 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || ||||| ||||| ||||||||| Sbjct 280331 CCAGTCAGGGTTTTCACAAAGATTTGCATC 280302 >seq1925 Length=318408 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| |||||||| || || || ||| ||| ||| Sbjct 244909 ACAAGGTGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCATCCTCC 244850 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || ||||| || | |||| || |||||||| || ||||| || || ||||||||| Sbjct 244849 AGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGA 244790 Query 45252 ATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 | | || || | | | | || | |||||| ||| ||| || |||||||| | ||||| Sbjct 244789 A-TCTTCGTCTTAACATTGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTTATGGTTTT 244731 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||||| ||||| || || || ||||||||| Sbjct 244730 TCCGGTAAGAGTCTTAACGAAGATTTGCATC 244700 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || || ||||| ||||| || ||||| | || ||| || Sbjct 245137 ACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTGCGGCCATCTTCA 245078 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | ||| ||||| || | ||||| | |||||||| || ||||| ||||| || |||||| Sbjct 245077 AGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGA 245018 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 ||||| ||||| || | |||||| ||| |||||| || || || | || || Sbjct 245017 ATTTTGGTTTTGACATTGTCAATGGTGTCAGAATTCTCGACCTCAAGGGTGATAGTCTTC 244958 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || || |||||||| |||||| Sbjct 244957 CCAGTGAGGGTCTTAACAAAAATCTGCATC 244928 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || ||||| ||||| || || || ||||| | ||| || || Sbjct 245594 CACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCGTCCTC 245535 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | || ||||| || | |||| || || ||||| || ||||||||||| || ||||| Sbjct 245534 AAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTG 245475 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||||| || | ||||||||| || || || || || | || || Sbjct 245474 AATTTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTT 245415 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||| ||||| Sbjct 245414 CCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 >seq958 Length=433838 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || || || || |||||||| || || || || ||| | || ||| || Sbjct 311921 ACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAGTGCGGCCATCTTCG 311980 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | |||||||| ||| | || | ||||| ||||| || || ||||||||||| || || Sbjct 311981 AGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCCTGG 312040 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || ||||| || | ||| || || || |||||||| || || | ||||| Sbjct 312041 ATCTTGGCTTTGACATTGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTATGGTTTTA 312100 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| ||||| || || || ||||| Sbjct 312101 CCCGTTAGGGTTTTCACGAAGATCTGCAT 312129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451986176429480