Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2659 113 7e-20 >seq2659 Length=772501 Score = 113 bits (124), Expect = 7e-20 Identities = 300/445 (67%), Gaps = 15/445 (3%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| || | | || || | ||||| | ||||||||| Sbjct 21230 TCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAACTCCATCCAATCGAATGGGT 21171 Query 159708 TCTTCA---CGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAA 159764 ||| | ||| | | | |||| | ||||| || |||| || |||||||| |||| Sbjct 21170 TCTGAACTCCGT-AAACCTTTTCG--TACCCGAGCGCAGCCAACAGTCTGTCTGCAACAA 21114 Query 159765 ATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTT 159824 | || ||||| || |||| |||||||||| ||||| | |||| | || || ||||| | Sbjct 21113 ACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAGCTTCACCGGAAGCGCAT 21054 Query 159825 CCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTC-G 159883 | | | ||||| ||| || ||||| || || |||| ||| | || || ||| Sbjct 21053 CAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTATC-CCCTGA-ACCTTCTC 20996 Query 159884 TAC-CCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAG 159942 || | | |||| | | || | | ||| || || |||||||| || || || Sbjct 20995 CACACTCAGCTTCTTCTTCA-GTAAGC--TGTACAACAGACAAGCAAAGTCACAATGAAG 20939 Query 159943 TCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGG 160002 || ||||| || || || | |||||| || | | | | |||||||| | ||||||| Sbjct 20938 CCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGCATTAACCCACGCTT 20879 Query 160003 TTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAAAAGATCCCCTCCACGGCCGCAA 160061 ||| ||||| || |||| |||||| | ||| || || ||||| || || |||| Sbjct 20878 TTTAAGCCAGAAGATGG-AGCAAAAACTCCCGGAGAAGAAAATCCCTTCAACACAAGCAA 20820 Query 160062 ACGCCACGAGCCTCTCACCAAAAGA 160086 | || | | ||||||| |||| || Sbjct 20819 AAGCAATTAACCTCTCAGCAAATGA 20795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795125252467280