Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2448 104 2e-17 seq2306 89.7 4e-13 >seq2448 Length=870776 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 39485 AATCATCG--CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATT 39542 |||||| | || || || | || || |||||||| | ||| ||| || || || || Sbjct 350531 AATCATGGTACCCCCACGAAGTCGAAGCACCAAATGAAGCGTGGATTCCTTCTGAATGTT 350472 Query 39543 ATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTG 39602 ||||| || | | | |||| |||||||||||||| |||| ||||| || || || Sbjct 350471 GTAATCTGCAAGTGTTCTTCCATCTTCCAATTGTTTCCCAGCAAAGATTAAGCGTTGTTG 350412 Query 39603 ATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCT 39660 ||| | || | |||||||||||| | || || || | || |||| | |||||| Sbjct 350411 ATCTGGTGGGATGCCTTCTTTGTCTTGGATCTTGATTTTGACATTGTCG--ATTGTGTCG 350354 Query 39661 GCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | ||| || || || || || |||||||| |||| ||||| ||||| |||||||| Sbjct 350353 GATGATTCGACATCTAAGGTTATGGTTTTACCAGTTAGGGTTTTCACGAAAATCTGCAT 350295 >seq2306 Length=232912 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | |||||| || |||||||| | |||| || || || || || || |||||| Sbjct 176787 CCTCCCCTCAAACGGAGCACCAAATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGCC 176846 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| || | || || || | ||||| || | |||||| || | ||| Sbjct 176847 AAAGTACGACCATCCTCGAGCTGCTTACCAGCGAAAATCAACCTCTGCTGGTCTGGGGGA 176906 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | ||||| ||||| | | | || || | | | | | | || |||| | ||| || || Sbjct 176907 ATACCTTCCTTGTC-CTGAATCTTCGTCTTAACATTGTCAATGGTGTCGGAGCTCTCAAC 176965 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | || || ||||| |||||||| Sbjct 176966 CTCCAAAGTAATGGTCTTCCCGGTAAGGGTCTTGACGAAAATCTGCAT 177013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347356844262629