Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2659 143 3e-29 seq758 136 4e-27 seq2306 127 2e-24 seq1558 125 7e-24 seq958 118 1e-21 seq2371 114 1e-20 seq2360 111 2e-19 seq1925 98.7 1e-15 seq2448 89.7 5e-13 >seq2659 Length=772501 Score = 143 bits (158), Expect = 3e-29 Identities = 472/723 (65%), Gaps = 12/723 (2%) Strand=Plus/Minus Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 ||| ||||| || || ||||| ||||| || ||| || || || | || | ||| Sbjct 21130 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 21071 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 |||||| ||||| || || | || | ||||||| |||| || || | || || Sbjct 21070 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 21011 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAA-ATGCTTGAACATCAAGCAAGCAA 132901 || ||| | || | ||| || | | || | ||| | ||| || ||||||| Sbjct 21010 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCT-GTACAACAGACAAGCAA 20952 Query 132902 AGTCGCAATGCAAGCCCT-CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGC 132960 |||| ||||| ||||||| |||| | || || || ||||| ||| || || || ||| Sbjct 20951 AGTCACAATG-AAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCGGC 20893 Query 132961 ATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCC 133020 || | || || ||||| ||||| || |||| | ||||| || || ||||| | || Sbjct 20892 ATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAAAATCCCT 20833 Query 133021 TCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAG 133080 || || || ||||| | | | ||| | || | |||| | | ||||| Sbjct 20832 TCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGA---TTCTGCACCATCAATCCAA 20776 Query 133081 CGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 || || ||||| || ||||| | || || || || || ||||| || || || | | Sbjct 20775 CGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGA 20716 Query 133141 CGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAG 133200 || ||| | || | || || || | || || |||||||| ||| Sbjct 20715 TGGGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAGAG 20656 Query 133201 TGTACGTTCTCCATGGCGATTTGAAAGCCGTA-AAAGCACCGCGCCTCGACCACCTGCAC 133259 || | ||| || ||||||||||| ||||| || ||||| || || || | ||||| || Sbjct 20655 TGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGC-GCGAGCTTCAGCAACCTGGAC 20597 Query 133260 TTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAA 133319 |||| ||| | || | ||||| ||| || |||||||| |||||||| || Sbjct 20596 CTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAAGAA 20537 Query 133320 GGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG-CG--CTCCCAGTCGCG 133376 ||| || | ||| |||||||||| | |||| | | | ||| || ||||||| || Sbjct 20536 GGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAGTGACG 20477 Query 133377 CGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTA 133436 || | || || || || || ||| | ||||| ||||| || || ||||||||||| Sbjct 20476 AACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTTTTGTA 20417 Query 133437 CAT 133439 ||| Sbjct 20416 CAT 20414 >seq758 Length=475707 Score = 136 bits (150), Expect = 4e-27 Identities = 162/220 (74%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| ||||| || ||||| |||||||| ||| | || || || | Sbjct 367807 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAGGTAGAATC 367748 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | |||| | | | | |||| ||| |||| |||||||| ||||| || | || Sbjct 367747 CTCGGACACAATCGACAATGTCAAAGCAAAGATCCAAGACAAAGAAGGAATCCCACCAGA 367688 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| || ||||||| ||| || || ||||| || |||| ||||| | |||||| Sbjct 367687 CCAACAACGCCTCATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACTTTAGCCGACTA 367628 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| |||||| |||| || || | || || ||| Sbjct 367627 CAACATCCAGAAGGAATCGACTCTTCACCTTGTTCTTCGT 367588 >seq2306 Length=232912 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || ||||| || || ||||||||| |||| |||||| | | Sbjct 177242 AATGCAAATCTTTGTCAAGACTCTCACTGGGAAGACCATCACCCTCGAAGTCGAGAGCTC 177183 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | || || || | ||||| ||||| |||||| | ||||| Sbjct 177182 CGATACTATTGACAATGTCAAGTCTAAGATTCAAGACAAGGAGGGTATTCCCCCAGACCA 177123 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| || | || | ||| || || ||||| || || | ||||||||| |||||||| Sbjct 177122 ACAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAAGATGGGCGCACCCTTGCTGACTACAA 177063 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || ||||||||||| ||| || | || || Sbjct 177062 CATCCAGAAGGAGTCCACACTTCATTTGGTGCTCCGTCTGCGTGGTGG 177015 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || ||||| || || || || || |||||| |||| || || | | Sbjct 177470 AATGCAGATCTTTGTCAAAACCCTAACAGGAAAGACAATCACCCTCGAAGTGGAAAGCTC 177411 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | |||| | || | ||||| | ||||| |||||||||||| | |||| Sbjct 177410 CGACACCATTGACAACG-TCAAGGCCAAAATTCAAGACAAGGAGGGAATTCCCCCAGACC 177352 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | || |||| || | ||| || || ||||| || || | || |||||| ||||||| Sbjct 177351 AGCAAAGGCTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGAACCCTCGCTGACTACA 177292 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || || | ||||| ||| | || || || Sbjct 177291 ACATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTAGGGGAGG 177243 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || || ||||| || | || || ||| | || Sbjct 177013 ATGCAGATTTTCGTCAAGACCCTTACCGGGAAGACCATTACTTTGGAGGTTGAGAGCTCC 176954 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || || | ||||| || || |||||| | ||||| Sbjct 176953 GACACCATTGACAATGTTAAGACGAAGATTCAGGACAAGGAAGGTATTCCCCCAGACCAG 176894 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| ||| || || ||||| || || | || || | |||||||||| Sbjct 176893 CAGAGGTTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGTACTTTGGCCGACTACAAC 176834 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| | || || ||||||||||| |||||||| || || Sbjct 176833 ATCCAGAAGGAGTCCACTCTCCATTTGGTGCTCCGTTTGAGGGGAGG 176787 Score = 107 bits (118), Expect = 2e-18 Identities = 168/237 (71%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 38236 TTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCG 38295 ||| | | |||||||| || || || || || || || || |||||||| |||| || | Sbjct 177705 TTATACAGATGCAAATCTTTGTGAAGACCCTTACTGGAAAGACCATCACTCTCGAGGTTG 177646 Query 38296 AGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCC 38353 || | |||| | | | || | | |||| || |||| ||||| || |||||||| Sbjct 177645 AGAGTTCTGACACCATTGACAATG--TCAAGACTAAGATCCAAGACAAGGAAGGAATTCC 177588 Query 38354 CGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAA 38413 | | ||||| || |||| || | ||| || ||||||||||| |||| || ||||| Sbjct 177587 CCCAGACCAGCAAAGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGCCGAACCCTAGC 177528 Query 38414 CGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| |||||||| | || || || | ||||| ||| | || || || Sbjct 177527 TGACTACAACATTCAAAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGGGGAGG 177471 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | || || || ||||| ||| | || || ||| | Sbjct 176786 AATGCAGATTTTCGTCAAGACCTTGACCGGAAAGACCATTACCCTGGAGGTTGAGAGTTC 176727 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | ||||| | ||||| || || || ||| | ||||| Sbjct 176726 GGACACCATCGACAATGTCAAGGCGAAAATTCAGGACAAGGAAGGCATCCCCCCAGACCA 176667 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | |||| || ||||| |||||||| || | | || || || ||||| Sbjct 176666 GCAGAGGTTGATTTTTGCCGGCAAGCAGCTGGAAGATGGAAGGACTCTTGCGGATTACAA 176607 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||| | || || || |||||||| || ||||| || || Sbjct 176606 TATCCAAAAGGAGTCAACCCTTCACTTGGTGCTCCGATTGAGGGGAGG 176559 >seq1558 Length=1070493 Score = 125 bits (138), Expect = 7e-24 Identities = 169/232 (73%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 38241 aaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| |||||||| ||||| || || || ||||| || ||| | || || || || Sbjct 239149 AAGATGCAGATATTCGTGAAAACCCTAACTGGGAAAACAATAACCCTAGAGGTTGAATCC 239208 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | | | || | | |||| || |||| ||||| || || || || | | Sbjct 239209 TCAGACACCATCGACAATG--TGAAGACTAAGATCCAAGACAAGGAAGGCATCCCTCCAG 239266 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| ||||| ||||| | ||| || |||||||| || |||| ||||| ||| ||||| Sbjct 239267 ACCAGCAGCGTCTCATCTTCGCCGGAAAACAGCTTGAAGACGGCCGCACTCTCGCCGACT 239326 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||||| ||||| |||| || || ||||||| ||| | || || || Sbjct 239327 ACAACATCCAGAAGGAGTCGACCCTTCACCTGGTGCTTCGTCTCAGGGGTGG 239378 >seq958 Length=433838 Score = 118 bits (130), Expect = 1e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| ||||| || ||||| |||||||| ||| | || ||||| | Sbjct 312133 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 312074 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | | || | | | | | | |||| || |||| |||||||| || || || | || Sbjct 312073 CTCGGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 312014 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||| || ||||| | ||| || |||||||| || || | ||||| | |||||| Sbjct 312013 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 311954 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || |||||| | || || || | || || ||| Sbjct 311953 CAACATTCAGAAGGAATCCACTCTTCACCTTGTTCTTCGT 311914 >seq2371 Length=888473 Score = 114 bits (126), Expect = 1e-20 Identities = 146/196 (74%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||||||||| || ||||| || ||||| |||||||||||| | || || || | Sbjct 99482 AAAAATGCAAATATTTGTGAAAACTCTTACGGGTAAAACCATCACCCTTGAGGTTGAAAC 99541 Query 38300 CACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | || | | | | |||| | || | ||||||| |||||||| || |||| ||| Sbjct 99542 TAGTGATACCATTAACAACG-TCAAGGCTAAAATCCATGACAAAGAAGGCATTCAACCCG 99600 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 | |||| ||| ||||| | ||| | || ||||| || ||||| || || || | ||| | Sbjct 99601 ATCAACTGCGTCTCATCTTCGCCGAAAAGCAGCTTGAAGACGACCGTACTCT-AGCGATT 99659 Query 38419 ACAACATCCA-AAAGG 38433 |||||||||| ||||| Sbjct 99660 ACAACATCCAGAAAGG 99675 >seq2360 Length=898569 Score = 111 bits (122), Expect = 2e-19 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || ||||| ||||||||| |||| |||||| | | Sbjct 280303 ATGCAAATCTTTGTGAAAACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGACATCT 280362 Query 38304 GACAGCGTGCA-AACGCTTAAAGAA-AAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | || | | |||| ||||| | || || ||||| || || | |||| Sbjct 280363 GACACTATTGAGAATG--TCAAGACCAAAATTCAAGATAAGGAGGGTATACCACCGGACC 280420 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| ||||||| | ||| || || ||| |||| || | | || || |||||||| Sbjct 280421 AGCAGAGGCTCATCTTCGCTGGTAAGCAGTTGGATGATGGCAGAACTCTAGCCGACTACA 280480 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || || || || || ||| |||| || || Sbjct 280481 ACATCCAAAAGGAGTCCACACTCCACTTAGTCCTCCGTCTGAGGGGTGG 280529 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || |||||||||||| | || ||||| | | Sbjct 280759 ATGCAGATTTTCGTGAAGACTCTCACTGGAAAAACCATCACCCTGGAAGTCGAAAGCTCT 280818 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | |||| ||| || | |||||||||||||| || | ||||| Sbjct 280819 GACACTATCGATATCGTTAAGACAAAGATTCAGGACAAAGAGGGAATCCCACCAGACCAG 280878 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || ||| |||| || | || || | || ||||| Sbjct 280879 CAGAGGCTGATCTTTGCAGGGAAGCAGTTGGATGATGGCCGGACATTGGCTGATTACAAT 280938 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || |||| | ||||| || |||||||| ||| Sbjct 280939 ATCCAGAAGGAATCTACATTGCACCTAGTGCTCCGGTTGAGAGGAGGC 280986 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| || || ||| | || || || | || Sbjct 280531 ATGCAGATCTTTGTCAAGACTCTGACAGGCAAGACGATTACCTTGGAAGTTGAAACTTCC 280590 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| ||| || | || |||||||| || || | |||| Sbjct 280591 GACACCATTGAGAATG--TGAAGACAAAGATACAGGATAAAGAGGGGATCCCACCAGACC 280648 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| |||| ||| || || ||||| || || | || || || ||||| | Sbjct 280649 AGCAGAGGCTTATTTTCGCAGGGAAGCAGCTTGAGGATGGCCGGACTCTTGCAGACTATA 280708 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| || ||||| | || ||||||||||| || |||||||| || || Sbjct 280709 ACATTCAGAAGGAGTCTACTCTGCATTTGGTTCTCCGTTTGAGGGGAGG 280757 >seq1925 Length=318408 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || |||||||| || |||| || ||| | Sbjct 244701 ATGCAAATCTTCGTTAAGACTCTTACCGGAAAAACCATAACTCTCGAGGTTGAGAGTTCT 244760 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | |||| || || | || || |||||||||||| | ||||| Sbjct 244761 GACACCATCGACAATGTTAAGACGAAGATTCAAGATAAGGAGGGAATTCCCCCAGACCAG 244820 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| || | || || ||| |||||||| Sbjct 244821 CAGCGTCTGATCTTTGCTGGAAAGCAGCTGGAGGATGGCCGAACGCTCGCTGACTACAAT 244880 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| |||| || || | || || ||| | ||||| || Sbjct 244881 ATCCAGAAGGAGTCGACCCTCCACCTTGTTCTCCGTCTTAGAGGAGG 244927 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/219 (70%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || || || | || || |||||||||||| | || |||||| | | Sbjct 245840 AATGCAAATATTTGTTAAGACCTTGACTGGGAAAACCATCACCTTGGAGGTCGAGAGCTC 245899 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | || | | |||| || || | ||||| || |||||||| | ||| Sbjct 245900 AGACACTATCGATAATG--TCAAGACTAAGATACAGGACAAGGAAGGAATTCCTCCTGAC 245957 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | |||| || || || ||| |||| |||| |||||| | |||||| Sbjct 245958 CAGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAGGACGGGCGCACTTTGGCAGACTAC 246017 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || |||||| | || || || | || || ||| Sbjct 246018 AACATTCAGAAGGAATCCACCCTTCACCTTGTCCTTCGT 246056 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || || |||||| | || |||||| | Sbjct 244929 ATGCAGATTTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTCGAGAATTCT 244988 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | ||| ||||| | ||||| || || |||||| | ||||| Sbjct 244989 GACACCATTGACAATGTCAAAACCAAAATTCAAGACAAGGAAGGTATTCCCCCAGACCAG 245048 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || || || || || || | ||||| || || |||||| Sbjct 245049 CAGAGGTTGATCTTTGCTGGAAAGCAACTTGAAGATGGCCGCACTCTTGCTGATTACAAC 245108 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| |||| || || | || || ||||| ||||| ||| Sbjct 245109 ATCCAGAAGGAGTCGACCCTCCACCTTGTTCTTCGTTTAAGAGGTGGC 245156 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || | || || ||||| ||||| | || || ||| | | Sbjct 245612 AATGCAAATTTTCGTCAAGACTTTGACTGGGAAAACTATCACTTTGGAGGTTGAGAGCTC 245671 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || || | || || ||||| |||||| | || || Sbjct 245672 AGACACCATCGACAATGTCAAGGCTAAGATTCAGGATAAGGAGGGCATTCCCCCAGATCA 245731 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | | || | || || || ||||| || || | | | ||||| |||||||| Sbjct 245732 GCAAAGATTGATCTTTGCAGGGAAGCAGCTCGAGGATGGGAGGACCCTTGCAGACTACAA 245791 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| | || || || |||||||| ||||| ||||| || Sbjct 245792 CATTCAAAAGGAGTCTACACTTCACTTGGTGCTTCGTTTAAGAGGAGG 245839 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||| || || || |||||| | || || || | | Sbjct 245157 ATGCAGATCTTTGTTAAGACCCTCACTGGGAAGACTATCACCCTTGAGGTTGAAAGCTCT 245216 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | ||||| ||||||| ||||| || || |||||| | || || Sbjct 245217 GATACAATTGACAATGTTAAAACCAAAATCCAAGACAAGGAAGGTATTCCCCCAGATCAG 245276 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | || || |||||||| || || | ||||| || || |||||| Sbjct 245277 CAGAGGTTGATCTTTGCCGGAAAACAGCTTGAGGATGGCCGCACTCTTGCTGATTACAAC 245336 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| || || |||| || || |||| || ||| | ||||| ||| Sbjct 245337 ATCCAGAAAGAGTCGACCCTCCACCTGGTTCTCCGTCTTAGAGGTGGC 245384 >seq2448 Length=870776 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 38240 aaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| || || || |||||||| ||| | || ||||| | Sbjct 350291 AAATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATC 350350 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | | | ||| || |||| |||||||| || || || | || Sbjct 350351 ATCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 350410 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||||| || | || | || || ||||| |||| || | | || || || || Sbjct 350411 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 350470 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || |||||| | ||||| ||||||||||| || Sbjct 350471 CAACATTCAGAAGGAATCCACGCTTCATTTGGTGCTTCG 350509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500153962241920