Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq781 129 7e-25 seq403 104 3e-17 seq2655 86.0 8e-12 >seq781 Length=476855 Score = 129 bits (142), Expect = 7e-25 Identities = 285/421 (68%), Gaps = 10/421 (2%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 ||||| || || | | || ||||| || | |||| ||||| || |||| ||| Sbjct 28798 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGT---GTTACCCTCA 28742 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || ||||||||||| || | |||||| || | || ||||||| ||||||||| || | Sbjct 28741 AAGCCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCC 28682 Query 16035 ATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 28681 CCGATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAA 28622 Query 16095 GGTTGATTTTCGCGAG-CGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || |||||| | | ||| ||| ||||| || || || || ||||||||||| Sbjct 28621 GGAGCATTTTCTTTTGCCTTCTTGAAA-AGATCGCGCACTCGAGATGCTCCCACACCAAC 28563 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 |||||| || ||||| | || | ||| || | || || || ||| || ||| || | Sbjct 28562 AAACATTTCAACAAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAG 28504 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || || || |||||||| ||||| |||||| || | || || |||| Sbjct 28503 CAATAGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAACAAGCAGAACACCCT 28444 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 || || ||| ||| || | || ||||||| || ||||| ||||||| || Sbjct 28443 TAGGGATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGAAATTCCACAACCT 28384 Query 16333 C 16333 | Sbjct 28383 C 28383 >seq403 Length=521970 Score = 104 bits (114), Expect = 3e-17 Identities = 252/377 (67%), Gaps = 16/377 (4%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| | ||| || ||||| ||||||| |||||||| | Sbjct 212244 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 212301 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | ||| || || | | |||| | || || ||||||||||||||||| || || ||| Sbjct 212302 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 212361 Query 16092 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 16145 || || || | ||||| | ||||| | ||||| ||| || | || ||| Sbjct 212362 CAAGGAGCCTTACTCTTCGCCTTC----TCAAACAAATCCC--TCACCCTGGAAGCTCCC 212415 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 16205 ||||||||||||| ||||||||| | | || | ||| | ||| || ||| | Sbjct 212416 ACACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCC 212475 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGG 16265 ||||| || | || | || | | ||||| || || || || ||| | ||||| Sbjct 212476 TCACCAGCGACCGCCCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGGCCCACAAGGAGA 212535 Query 16266 GCACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCC 16325 ||| ||| || || || || | || ||| | ||||| | ||| | ||| ||| Sbjct 212536 CACCCTTTTGGGATTTTAGCCCCCAATGCAGTGTACTTATCAGGGTTCTTCAAAAAGTCC 212595 Query 16326 ACAATCTCTTCCAATTC 16342 |||| || | |||||| Sbjct 212596 ACAACTTCCTGCAATTC 212612 >seq2655 Length=132589 Score = 86.0 bits (94), Expect = 8e-12 Identities = 155/225 (69%), Gaps = 14/225 (6%) Strand=Plus/Minus Query 15888 TCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGCG 15947 ||||| | || || | ||| | || | |||||| || ||| ||||| ||||| || Sbjct 5801 TCAAATCTTCCGGGTCTAAGCAATGCCTGATCAAGAATCTCAGGCCGATTTGTTGCTGCA 5742 Query 15948 ATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATA 16007 ||||||| || || || | | |||||||||||||||| || | | ||| || | | Sbjct 5741 ATGACAATAACTCCAGTATTCCCAGCAAAACCATCCATCTCAGTGAGCAACTGATTTAAA 5682 Query 16008 GTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA--GCACTG-----CGTTGCTTTCC 16060 ||||| |||| ||| || ||| || |||||| || ||| | |||| | || Sbjct 5681 GTTTGCTCCCTTTCGTCGTTCCCT------CCACCAATGC-CTGTCCCTCTTTGCCTCCC 5629 Query 16061 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC 16105 || || || |||||||||||||| || | ||| || |||||| Sbjct 5628 AACAGCGTCGATCTCATCAATGAAAACCAAGCAAGGAGCATTTTC 5584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620719021289360