Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq558 98.7 1e-15 seq2659 89.7 6e-13 seq2915 84.2 3e-11 seq2781 84.2 3e-11 seq2662 84.2 3e-11 seq2047 84.2 3e-11 >seq558 Length=1338247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 110764 CCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCA 110823 ||| | |||| |||||| ||||| || ||||||| |||| |||||||| | ||| ||| Sbjct 392552 CCCCCTTGGTCAACATATCGTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCCA 392611 Query 110824 TCGGATTGACCATTTGTACCCCTAATTCTGGACTT--ATTGGCACGAATGTCGTGGATAT 110881 | ||| ||||| ||||| | ||| |||| | |||||||||||| ||| | | Sbjct 392612 TTTGATGTCCCATTAGTACCGCGAATATA--ACTTCCAGTGGCACGAATGTTGTGCACAG 392669 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAA 110941 | ||||||||| || || |||| ||||| |||||||| | || ||| |||| | Sbjct 392670 AAACACCAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAGA 392729 Query 110942 TACCATCAAT 110951 | || ||||| Sbjct 392730 TTCCTTCAAT 392739 >seq2659 Length=772501 Score = 89.7 bits (98), Expect = 6e-13 Identities = 296/453 (65%), Gaps = 8/453 (2%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || |||||||||||| || || || || ||||| || |||| | || Sbjct 20955 GCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCC 20896 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | || || ||||| ||||||| |||||||| || || ||||| || Sbjct 20895 GGCATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAAAATC 20836 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCAC 119675 || || ||||| || ||||| | || | ||||||||| | | | || | ||| Sbjct 20835 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGATTCTGCACCATCAATCCAA 20776 Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGT 119735 |||||||| | ||||| || | || |||| ||||| || || ||||| Sbjct 20775 CGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAAAGA 20716 Query 119736 TGCTTCTTTTCAG--CACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCAC 119793 || |||| || | ||| || ||||| | || | || |||||| | ||| Sbjct 20715 TG--GGTTTTAAGGTTAGAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATTTCAG 20658 Query 119794 CATGAACCATTTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGC 119852 |||| ||||| || | || || || |||| || | ||||||||| | || || Sbjct 20657 AGTGAATGTTTTCAATG-GCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACCTGG 20599 Query 119853 ACTTC-GTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAA 119911 || || ||| || || | || ||| || | ||| || || || ||| | ||||| Sbjct 20598 ACCTCTTTCATGAATCTT-CCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCGAA 20540 Query 119912 GAATGCTAAGATGTACTTTATGAATTTCTGTTC 119944 ||| || | ||||| | ||||| | |||||| Sbjct 20539 GAAGGCAAGGATGTGGGTGATGAAATGCTGTTC 20507 >seq2915 Length=662096 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 59753 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 59698 >seq2781 Length=732451 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 133411 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 133356 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 153131 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 153076 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 457143 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 457198 >seq2662 Length=126019 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 75164 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 75219 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCC 136772 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| Sbjct 75320 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCC 75375 >seq2047 Length=313033 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| | ||||||| ||| | Sbjct 162326 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCAGGTTCGACCCCTGCA 162267 Query 136777 GGGAACAGCTTTTAGATATATTTT 136800 || || ||||| | |||||| Sbjct 162266 TGGGCCATTTTTTATTTTTATTTT 162243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588953817691400