Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq781 127 2e-24 seq558 111 2e-19 seq403 100 3e-16 >seq781 Length=476855 Score = 127 bits (140), Expect = 2e-24 Identities = 280/417 (67%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | |||| ||||| || | | ||||| Sbjct 28798 TCAAGAATGTCTGCCCTGTTAGTTGCAGCAACAACAATGATACCAGTGTTACCCTCAAAG 28739 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | ||| || || | || ||||||| ||||||||| || | Sbjct 28738 CCATCCATCTCAGTTAGAAGCTGATTCAATGTCTGTTCCCTTTCATCATTTCCTCCCCCG 28679 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| || | |||| |||| || |||||||| ||||||| || ||||| || || Sbjct 28678 ATTCCAGTACCTCTTTGCCTTCCTACTGCATCAATTTCATCAACAAACACAATGCAAGGA 28619 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 |||||| || | | || |||||||| || | || ||||||||||||||| Sbjct 28618 GCATTTTCTTTTGCCTTCTTGAAAAGATCGCGCACTCGAGATGCTCCCACACCAACAAAC 28559 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 || || ||||| | || | ||| || | || || || ||| || ||| || ||||| Sbjct 28558 ATTTCAACAAACTCTGACCCAGAA-ATGGAGAAAAAAGGAACACCAGCTTCTCCAGCAAT 28500 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGG 9583 || || || |||||||| ||||| |||||| || | || || ||||| || Sbjct 28499 AGCCTTAGCCAGTAGAGTCTTTCCCGTCCCTGGCGGGCCAACAAGCAGAACACCCTTAGG 28440 Query 9584 AATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || ||| ||| || | || ||||||| || ||||| ||||||| ||| Sbjct 28439 GATGCGGGCTCCAACAGCAGTAAACCTTTCAGGTTTTTTCAGAAATTCCACAACCTC 28383 >seq558 Length=1338247 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || |||||||| || ||||||||||| ||||| | || || ||||| | |||| Sbjct 392893 TGAGGCCTTGGTGTGCCGGCATTGAAGAGAGTTGGAGAAGCATGGGTGAACCACCTTTGG 392952 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| || |||||||| | | | || ||||| || ||| |||||| || | || Sbjct 392953 GACATCAAGTGGTATGTCTTGATGGCCGACTCAATATCATCCTTGTGGATCCCAACAGCA 393012 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGATA- 107346 || | ||| ||||||| || ||| | |||| | | || | || | | ||||| Sbjct 393013 ACCCTCATCAACATGTGCTGAGGTCTCTCCACAACTGTCCCTTGGACCTTCAGGAGATAT 393072 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 | || ||||||||||||| | ||||||| || || | ||| ||||||| Sbjct 393073 GATC-TCTCAAGGGTTTTAAAACCAAAGAAATCATAGTCAAAGTCCCG 393119 >seq403 Length=521970 Score = 100 bits (110), Expect = 3e-16 Identities = 251/376 (67%), Gaps = 14/376 (4%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| | || || ||||| ||||||| |||||||| | Sbjct 212244 AAACCCATCCATCTCAGTCAACAACTGATTGATAGTCTGTTCCCTCTCATCATTTCC--A 212301 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | ||| || || | | |||| | || || ||||||||||||||||| || ||||| Sbjct 212302 CCTCCCATTCCTGCTCCTCTTTGCCTCCCAACAGCATCAATCTCATCAATAAACACAATG 212361 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || || | ||| || | ||||| | ||| | ||||| || ||||| Sbjct 212362 CAAGGAGCCTTACTCTTC----GCCTTCTCAAACAAATCCCTCACCCTGGAAGCTCCCAC 212417 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 ||||||||||| ||||||||| | | || | ||| | ||| || ||| | || Sbjct 212418 ACCAACAAACAGCTCCACAAACTCAGAAGCTGCACACGAAAAGAACGGCACACCGGCCTC 212477 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 9574 ||| || | || | || | | ||||| || || || || ||| | |||| | | Sbjct 212478 ACCAGCGACCGCCCTCGCCAACAATGTCTTTCCGGTTCCAGGGGGGCCCACAAGGA-GAC 212536 Query 9575 ACCC-CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCA 9633 |||| ||| || || || || | || ||| | ||||| | ||| | ||| |||| Sbjct 212537 ACCCTTTTGGGATTTTAGCCCCCAATGCAGTGTACTTATCAGGGTTCTTCAAAAAGTCCA 212596 Query 9634 CAATCTCTTCCAATTC 9649 ||| || | |||||| Sbjct 212597 CAACTTCCTGCAATTC 212612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589958579848120