Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq2002 529 2e-145 seq1325 500 1e-136 seq1658 471 5e-128 seq2646 100 3e-16 seq2892 82.4 9e-11 seq2515 82.4 9e-11 seq2433 82.4 9e-11 >seq2002 Length=1023113 Score = 529 bits (586), Expect = 2e-145 Identities = 721/1002 (72%), Gaps = 3/1002 (0%) Strand=Plus/Plus Query 181436 GATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGACTACTTCTTTTT 181495 ||||||||| | | ||||| || || ||||| || |||||||| ||| | || ||| Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTT 167499 Query 181496 CCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTTGTTACGTCGTGG 181555 | ||||||| | || | || || ||| | || || || || ||||| || || ||| Sbjct 167500 CGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558 Query 181556 TACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTG 181615 || ||||| |||||||| ||| || | || ||| |||||| | || ||| | || Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAGTT 167618 Query 181616 TCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAAGCTCAG 181675 || || |||||| | | | | || ||| | | |||| |||||||| ||||| || Sbjct 167619 TCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAA 167678 Query 181676 GGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 181735 || || || || ||| ||| | || || || ||| ||||||| || || || || Sbjct 167679 GGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGT 167738 Query 181736 GCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG-TCTAATCGGAAT 181794 || ||||| ||||| ||||||||| | | ||||| || |||||||| || || | | Sbjct 167739 GCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCA-ATT 167797 Query 181795 CCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGTCTCTGTATTTCT 181854 || || || ||||| || || || || ||||| |||||||| || || |||||||| || Sbjct 167798 GCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCT 167857 Query 181855 CATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGGTGTCGCGGCGAT 181914 || ||||| || || || || ||||||||||||| || ||||| ||| | || || || Sbjct 167858 AATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTAT 167917 Query 181915 TTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATAT 181974 || || ||| ||||||| | || || |||||||||||||| || ||||| || ||||| Sbjct 167918 ATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATAT 167977 Query 181975 GATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGT 182034 |||||| ||||| ||| | |||| | ||| |||| | || ||||| || | ||||| Sbjct 167978 GATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGT 168037 Query 182035 GGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAAC 182094 || |||| | | | | |||||||||| |||||||| ||| || || | |||| Sbjct 168038 AGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAAC 168097 Query 182095 TCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGG 182154 |||| |||||||| ||||||||||| || || |||||||| ||||| || || || || Sbjct 168098 CCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGG 168157 Query 182155 TATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGG 182214 |||| ||| |||||| | ||||| |||||||||||| | ||||| || || | || Sbjct 168158 CGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 168217 Query 182215 TCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTT 182274 | | |||| ||| | | || | | ||| | ||| | ||||| ||||| |||||||| Sbjct 168218 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTT 168277 Query 182275 TGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTTCTACACAAAGAA 182334 | ||||| |||||| | ||| | ||||| || || || || || |||||||| || || Sbjct 168278 CATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAA 168337 Query 182335 CATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCAACCACATGAGAA 182394 |||||||| || |||||| | ||||| ||| | || | ||||| || ||||| || Sbjct 168338 TATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 168397 Query 182395 CTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 | || | ||||||||||| || ||||| | || ||||| || Sbjct 168398 CCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq1325 Length=385796 Score = 500 bits (554), Expect = 1e-136 Identities = 709/990 (72%), Gaps = 5/990 (1%) Strand=Plus/Plus Query 179747 CTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTTCT 179806 |||||| | | | ||||| || || ||| | || ||| | || ||||| || ||| | Sbjct 6984 CTTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTT 7043 Query 179807 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 179865 |||||| ||||| | ||| | |||||| |||| || || | |||||||| ||||||| Sbjct 7044 GATGATCCCAACCTTATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTC 7102 Query 179866 CCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACA 179925 | | || || || ||||| || ||||||| || | || || || | || || |||| Sbjct 7103 CTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACA 7162 Query 179926 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTATCCCA 179985 | || || || ||||| || ||||| |||| || || || | ||||| ||||| | Sbjct 7163 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 7222 Query 179986 TCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCG 180045 | |||||||| || ||| |||| |||||| | || ||||| ||||||| |||| | | Sbjct 7223 TATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTG 7282 Query 180046 TCTTCCACTTCCTGATTGGCATCT-ATGCCTACATGGGTCGTGAGTGGGAACTTTCTTAT 180104 | | |||| | |||| | ||| || ||||||||||||||||||||| || Sbjct 7283 TTCTAAACTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTC 7341 Query 180105 CGCTTGGGTATGCGCCCCTGGATCTGCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCT 180164 || ||||||||||||| ||||| || |||||||| ||||| || || || || || Sbjct 7342 CGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACT 7401 Query 180165 GCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGC 180224 | ||| ||| | |||| | | |||||||| || ||||| | ||||| || || Sbjct 7402 GTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 7461 Query 180225 ATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCTGATGCAC 180284 || ||| | || ||||||| ||| |||| ||||| || |||||||||||||| ||||| Sbjct 7462 ATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAT 7521 Query 180285 CCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGCAATGCAC 180344 || || | |||| | || ||||| ||||| |||| || || || | || ||||| Sbjct 7522 CCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCAT 7581 Query 180345 GGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTAC 180404 ||||| |||| || ||| || | | |||||||| ||| ||| || || | Sbjct 7582 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAG 7641 Query 180405 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTC 180464 ||||||| || | ||||| ||||| || || || || || ||||| ||||| || ||| Sbjct 7642 GGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 7701 Query 180465 GGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTG 180524 || || ||||||| || ||||| ||||||||||| ||||| || ||||||| | Sbjct 7702 GGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTC-TTTACCTTCTTCTTA 7760 Query 180525 GCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTC 180584 || || |||||||| || || || ||||| ||||| | || | || || ||||| ||| Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 180585 AACCTCAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAAC 180644 ||| | || |||||||| |||||||| || | ||||| ||||||||||||| | | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 180645 ACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAAT 180704 |||||||| || | | |||| ||| | ||||||||||||||||| || |||||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 180705 GCTCACAACTTCCCACTTGACCTGGCAGCT 180734 ||||| |||||||| | ||||| || ||| Sbjct 7941 GCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 471 bits (522), Expect = 5e-128 Identities = 694/974 (71%), Gaps = 20/974 (2%) Strand=Plus/Minus Query 179775 AACCGCCTCTATGTCGGTTGGTTCGGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACT 179834 ||||| || ||| | || ||||| || ||| ||||||| || || | ||| | |||||| Sbjct 187897 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 187838 Query 179835 ATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGA 179893 |||| || || | |||||||| |||||||| | | || || ||||| || ||||| Sbjct 187837 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGA 187779 Query 179894 ACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTTC 179953 ||| || | || || || | || || || || || || || ||| | || ||||| | Sbjct 187778 ACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTAC 187719 Query 179954 TTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGAAGCCGCATCGCTTGACGA 180010 || ||| ||| | | ||||| ||||| || || ||||| || | | |||| || Sbjct 187718 TTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGA 187662 Query 180011 GTGGCTGTATAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATTGGCATCT- 180069 |||| | || ||||||||||||| |||| | || | ||||| | |||| | Sbjct 187661 GTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGC 187602 Query 180070 ATGCCTACATGGGTCGTGAGTGGGAACTTTCTTATCGCTTGGGTATGCGCCCCTGGATCT 180129 ||| || ||||||||||||||||||||| || || | ||||||||||| ||||| Sbjct 187601 ATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTG 187543 Query 180130 GCGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCG 180189 || ||||||| |||| | || || || ||||||| ||| | |||| || | | Sbjct 187542 TTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTG 187483 Query 180190 GTCAAGGTTCATTCTCTGACGCAATGCCCCTCGGCATTTCTGGCACCTTCAACTACATGC 180249 ||||||| ||| | ||| | ||||| || | || ||||| || ||||||| ||| Sbjct 187482 GTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGA 187423 Query 180250 TTGTTTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTAGCAG 180309 |||| ||| | || |||||||||||||| ||||| || || |||||| | || ||||| | Sbjct 187422 TTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTG 187363 Query 180310 GTGTC--------TTCGGCGGTTCACTGTTCTCC-GCAATGCACGGTTCACTGGTTACCT 180360 ||| | |||||| | || || |||| || ||||| ||||| |||| | | Sbjct 187362 GTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGTTCCTTGGTAATTT 187304 Query 180361 CTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTC 180420 || || || | |||||||| |||| ||| || || | ||||||| || || | Sbjct 187303 CTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGC 187244 Query 180421 AAGAAGAAGAGACCTACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCC 180480 |||| ||||| || || || || || ||||| ||||| || |||| || ||||||| | Sbjct 187243 AAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTC 187184 Query 180481 AGTATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCG 180540 | ||| | |||||| |||| ||||| | ||||||||| | || || |||||||| | Sbjct 187183 AATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAG 187124 Query 180541 TTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCA 180600 | || || ||||| | ||| | || | || || ||||| |||||| | || ||||||| Sbjct 187123 TAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCA 187064 Query 180601 ACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTAC 180660 | |||||||| || | ||||| ||||||||||||| | || |||||||| || | Sbjct 187063 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCA 187004 Query 180661 TCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCAC 180720 | ||||| ||| || ||||||||||||||||| || ||||||||||| |||||||| | Sbjct 187003 TTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTC 186944 Query 180721 TTGACCTGGCAGCT 180734 | ||||| || ||| Sbjct 186943 TAGACCTAGCCGCT 186930 >seq2646 Length=128401 Score = 100 bits (110), Expect = 3e-16 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 171914 CGCTGCAGATGAAGCG---GGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGTTC 171970 || ||||| ||||| |||||||| || || || ||| | || |||||||| || Sbjct 24017 CGATGCAGCTGAAGACAAAGGGGTTGACTTGCCTTACTCATGCAGGGCAGGTGCCTGCTC 24076 Query 171971 CAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTTGA 172030 | |||||||||| | |||| ||||| || || |||||||| || ||| |||||||| Sbjct 24077 AACCTGTGCTGGTCAGCTTGTAAGTGGAACAGTTGATCAGTCCGATGGATCCTTCCTTGA 24136 Query 172031 TGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTACAAGCGATTG 172090 ||| |||||||||| ||| | | || || |||||| |||| || | || || Sbjct 24137 TGACAATCAAATGGAGAAAGGTTATTTGCTCACTTGTGTTTCTTACCCGCGATCAGACTG 24196 Query 172091 TGTTGTCCTGGCTGAGCAGGAGGATAGTCTTTACTGAGG 172129 ||| ||| | | |||||| | |||||||||||| Sbjct 24197 TGTAATCCATACCCACAAGGAGGGTGATCTTTACTGAGG 24235 >seq2892 Length=679138 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 577630 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 577571 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 577570 CCTACTTGGGGAG 577558 >seq2515 Length=817576 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | ||||||||||||| ||| Sbjct 692190 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTAGGTTCGAAT 692131 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 692130 CCTACTTGGGGAG 692118 >seq2433 Length=182693 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||| ||||||||||| Sbjct 105642 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCATAGGTTCAAAT 105583 Query 141314 CCTACCTGGGGAG 141326 ||||| | ||||| Sbjct 105582 CCTACTTTGGGAG 105570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610373810930520