Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq1325 457 1e-123 seq1658 385 6e-102 seq2002 300 2e-76 seq603 102 9e-17 >seq1325 Length=385796 Score = 457 bits (506), Expect = 1e-123 Identities = 684/965 (71%), Gaps = 7/965 (1%) Strand=Plus/Plus Query 169423 ACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACA 169482 || || ||||| | ||| |||| |||||||||||| | ||||| ||| |||| | || Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 169483 GCAGCAGCATGT-TTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAAT 169541 ||| | | ||| || || | || |||||||| || |||| || ||||| || || || Sbjct 7066 GCAACTTC-TGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 169542 CAGAGAACCAGTAGCGGGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGT 169601 | |||| || | || ||| | | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 169602 TCCATCATCAAACGCTATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGA 169661 ||| | || ||||| || | ||||| || ||||| ||||||||||| | ||||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 169662 TGAATGGTTGTATAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTAT 169721 ||| ||||| || || || ||||||||| | | | | | |||| | ||||| | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT 7304 Query 169722 CTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGAT 169781 || || ||||| | |||||||||| | | | | || ||||| |||||||| Sbjct 7305 AGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT 7364 Query 169782 CTGTGTTGCATACTCTGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATT 169841 ||||||||| || || || || | || || | ||| ||||| | |||| | | Sbjct 7365 TGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAAT 7424 Query 169842 TGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTAT 169901 |||||| || || |||||||||||||| ||||| ||||| |||||||||||||||| Sbjct 7425 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTAT 7484 Query 169902 GTTCGTTTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGC 169961 | | || ||||| || ||||| ||||| || |||||||| || | |||| ||| ||||| Sbjct 7485 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC 7544 Query 169962 AGGAATGTTCGGAGG--ATCTTTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCT 170019 || |||||| ||| ||||||| | || ||||||||||| | || ||||| | Sbjct 7545 TGGTGTGTTCGAAGGCTCTCTTTATAGT--GCTATGCATGGTTCCTTGGTAACTTCTAGT 7602 Query 170020 CTAATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAA 170079 | ||||| ||||| ||| | | || || || | ||||| | ||| | ||||| Sbjct 7603 TTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAG 7662 Query 170080 GAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTAT 170139 |||||||| || || || ||||| || || ||||| || || || | ||||| || ||| Sbjct 7663 GAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATAT 7722 Query 170140 GCTTCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGT 170199 ||| ||||||||||| | | ||| ||||||| |||| | || ||||| ||| || Sbjct 7723 GCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGT 7781 Query 170200 GTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTT 170259 | ||||| || || | ||||| | || ||||| |||||||| ||||||||||| || Sbjct 7782 ATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTC 7841 Query 170260 AACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAAC 170319 |||||||| || |||||| | | || | | | || |||| |||| | | ||| Sbjct 7842 AACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAAC 7901 Query 170320 AGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGAC 170379 || ||||| ||||||||||||||||||||| | ||||| || |||||||| | |||| Sbjct 7902 CATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGAC 7961 Query 170380 CTAGC 170384 ||||| Sbjct 7962 CTAGC 7966 >seq1658 Length=355568 Score = 385 bits (426), Expect = 6e-102 Identities = 662/957 (69%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 169438 TATGTTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGT-TT 169496 ||| |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || Sbjct 187888 TATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTC-TGTATT 187830 Query 169497 CATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGC 169556 || | || |||||||| || |||| | ||||| || || || | ||||| || | Sbjct 187829 TATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGAACCTGTTTC 187770 Query 169557 GGGTTCTTTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGC 169616 || ||| | | || || || || || || || ||| | || |||| | | | Sbjct 187769 CGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTACTTTTGCAGT 187710 Query 169617 TATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAA 169676 | | || | ||||| || ||||| || ||||| || |||||||| ||||| || || Sbjct 187709 TGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGAGTGGTTATACAA 187650 Query 169677 TGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGG 169736 |||||||||||| | | | | | ||||| | ||||| | || || ||||| Sbjct 187649 CGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCATGTTATATGGG 187590 Query 169737 AAGACAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTC 169796 | |||||||||| | | | |||| ||||| |||||||| ||||||||| | Sbjct 187589 TCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTT 187530 Query 169797 TGCACCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATT 169856 || | | | || || ||||| ||||| | |||||| ||||||| || ||| Sbjct 187529 AGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGATT 187470 Query 169857 CTCTGATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGC 169916 | |||||||||||| |||| ||||| |||||||||||||||||| | || ||| | || Sbjct 187469 TTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGATTGTATTCTAGGC 187410 Query 169917 AGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAA--------TG 169968 ||||| ||||| || |||||||| || |||||| ||| ||||| || | Sbjct 187409 TGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGACCTGGTGTA 187350 Query 169969 TTCGGAGGATCTTTATTCTCA-GCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAG 170027 ||||| | ||| | |||| || ||||||||||| | || | ||| | | || || Sbjct 187349 TTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATTAG 187291 Query 170028 AGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAAC 170087 ||||| ||||| | || || || | ||||| | ||||| ||||| |||||||| Sbjct 187290 GGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGCAAGAGGAAGAAAC 187231 Query 170088 ATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATT 170147 || || || ||||| || || ||||| || | || | ||||| || ||| || || Sbjct 187230 TTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTCAATATACTAGTTT 187171 Query 170148 CAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTT 170207 |||| |||| | | ||||||||||| |||| | || ||||| ||| || | ||||| Sbjct 187170 CAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTT 187111 Query 170208 AACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATC 170267 | || | ||||| | || ||||| |||||||| ||||||||||| || |||||||| Sbjct 187110 TATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATC 187051 Query 170268 AGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAA 170327 || |||||| | | || | | || |||| |||| | | ||| | || || Sbjct 187050 TGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCTAA 186991 Query 170328 CTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 170384 | | ||||||||||||||||||||| | ||||| || |||||||| ||||||||||| Sbjct 186990 CCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 186934 >seq2002 Length=1023113 Score = 300 bits (332), Expect = 2e-76 Identities = 689/1038 (66%), Gaps = 22/1038 (2%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| | | || ||||||||| ||| || ||||| || || |||| |||||||| Sbjct 167428 TTTGATAGTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGG 167487 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || || | ||||| || | | | || |||||||| ||| || ||||| Sbjct 167488 CTATTGCT-CTTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 167546 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | || || ||| | || || || || ||| || Sbjct 167547 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTA 167606 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || ||||||| || |||| | | | || | | |||| || ||||| Sbjct 167607 ACCGCGACAGTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGT 167666 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 || ||||||||||| ||| |||||||| ||| | || || | |||| ||||| Sbjct 167667 CCCGAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTT 167726 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | ||||| | || | ||| |||||||| ||| | | ||||| ||| | || || Sbjct 167727 GCTCTTCATGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGA 167786 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 || | | ||||| || ||| ||||||| |||| | || || || || | Sbjct 167787 TCCGTTCAATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTT 167846 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 | || || || ||||||||||||||| |||||||||| ||||| || ||| Sbjct 167847 TCTGTATTCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 167906 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 | ||||| || ||||| | || | || | ||||| || || || ||| ||||| Sbjct 167907 ATAGCAGCTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAAT 167966 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| ||||| || || | || | || || |||| || |||||| Sbjct 167967 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCAT 168026 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 || || || || | || | || | ||||||| | | || | Sbjct 168027 GGCGCTACCGTAGAAAATAATTTATTTGAAGAC------GGTGATGGGG----------- 168069 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| |||||||| || ||| | || || || | ||||||||||| ||| | Sbjct 168070 CAAA----TACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAACTTATTCAATGGTC 168125 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || ||||| || || ||||| ||||||| || || ||| | | ||| Sbjct 168126 ACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCAATAAATGTTGGTTA 168185 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| ||||||| || || || || | ||| | |||| || | || | || Sbjct 168186 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 168245 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 ||| | || | ||||| | || || || || | || || || || | ||||| ||| Sbjct 168246 GGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 168305 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || || || || || ||||||||||| || ||||| || | || |||||||| | || Sbjct 168306 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 168365 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | || || || ||||| ||| | ||||||| || || || |||| Sbjct 168366 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 168425 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 168426 CGTGGAAACGCTCTTTAA 168443 >seq603 Length=500837 Score = 102 bits (112), Expect = 9e-17 Identities = 172/245 (70%), Gaps = 8/245 (3%) Strand=Plus/Minus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGC--AAAGGTTTGGTATTCCTATGG 153789 ||||| | |||| |||||||| ||| || || || | || |||||| | ||||||| Sbjct 53645 GGTGAATTGGGAGCTGATATTGTTGTTGG--GTCAGCTCAGAGATTTGGTGTGCCTATGG 53588 Query 153790 GATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATAC 153849 | |||||||||||||||||||| ||||| || || | | |||| ||||| ||| | Sbjct 53587 GTTATGGAGGTCCTCATGCTGCTTTCTTGGCCACCTCTCAAGAGTACAAGAGGTTGATGC 53528 Query 153850 CTGGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGC 153907 | || |||||| | | || ||| || ||| || || || | | || Sbjct 53527 CAGGAAGAATTATTGGTGTTAGT--GTTGATGCGTCTGGCAAGTCTGCTCTTCGTATGGC 53470 Query 153908 ACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGC 153967 | | ||||| || ||||| || || ||||||||||| || || || |||||||| || || Sbjct 53469 AATGCAGACAAGGGAGCAACACATTAGGAGAGACAAGGCTACTAGCAACATCTGTACTGC 53410 Query 153968 TCAGG 153972 ||||| Sbjct 53409 TCAGG 53405 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 155018 TGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGGAGGTGG 155077 ||| |||||||| |||||||| ||| |||| ||||||||||| ||||||||||| || || Sbjct 50303 TGGAGCAGATGTTTGTCATCTCAACCTACACAAAACATTCTGCATTCCACATGGTGGAGG 50244 Query 155078 AGGTCCTGGCGTAGGTCCTATAGGTGTAGCAAAACATCTCACACCATTT 155126 |||||||| | || || || |||||| ||||| | |||||||| Sbjct 50243 TGGTCCTGGTATGGGCCCCATTGGTGTAAAGAAACACTTGGCACCATTT 50195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579190985397920