Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq1325 493 1e-134 seq2002 473 1e-128 seq1658 459 3e-124 >seq1325 Length=385796 Score = 493 bits (546), Expect = 1e-134 Identities = 694/968 (72%), Gaps = 5/968 (1%) Strand=Plus/Plus Query 167884 ACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 167943 ||||| ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 167944 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 168002 |||||| ||||| || || | |||||| | |||||||| | || || || || || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 168003 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 168062 ||||||| || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 168063 CCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGA 168122 ||| ||||| ||||| || | ||||| ||||| || ||||||||||| || | || Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 168123 TGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTAT 168182 ||||||||| || ||||| ||||||| ||||| | || | |||| | | ||| | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT 7304 Query 168183 CT-ATGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGA 168241 ||| || ||||| ||||| ||||||||| | ||| | |||||||| || |||| Sbjct 7305 AGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGA 7363 Query 168242 TCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTT 168301 | ||||||||| || || || || || || || | || || ||| | | || | Sbjct 7364 TTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAA 7423 Query 168302 TCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACA 168361 | |||||||| || || ||||||| ||||| || |||||||| | || ||||||| | Sbjct 7424 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTA 7483 Query 168362 TGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTG 168421 || | || ||||| ||||||||||| || || |||||||| || | ||| | || || | Sbjct 7484 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 7543 Query 168422 CTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTACTTCTTCTC 168481 |||| || || | ||| | | | |||||||||||| || ||||| |||||| | Sbjct 7544 CTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 7603 Query 168482 TCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGGACAAGAAG 168541 | | || || || || ||| ||||| || | ||||||| ||| | ||||| | Sbjct 7604 TGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGG 7663 Query 168542 AAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACG 168601 ||||||| || || || ||||| ||||||||||| ||||| || |||||||| ||||| | Sbjct 7664 AAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATG 7723 Query 168602 CTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCA 168661 || ||||||||||| || || || | ||||||| | ||||| |||||||| || || | Sbjct 7724 CTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTA 7782 Query 168662 TCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCA 168721 | ||||| || || | || | || ||||| |||||| | || |||||||| |||| Sbjct 7783 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCA 7842 Query 168722 ACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACC 168781 |||| || | ||||| |||| |||||||| | | || ||||| ||| | | |||| Sbjct 7843 ACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACC 7902 Query 168782 GCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTCGATC 168841 ||| | |||||||||||||||||||| ||||| || || |||||||| | || | Sbjct 7903 ATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACC 7962 Query 168842 TTGCTGCT 168849 | || ||| Sbjct 7963 TAGCCGCT 7970 >seq2002 Length=1023113 Score = 473 bits (524), Expect = 1e-128 Identities = 709/1004 (71%), Gaps = 7/1004 (1%) Strand=Plus/Plus Query 169319 GATGACTGGCTCAAACGCGACCGCTTTGTATTCATTGGTTGGTCTGGTCTACTTCTTCTT 169378 ||||||||| | | ||||| || || || | ||||||||||| ||| | || ||| Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTT 167498 Query 169379 CCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTGGTACAGCGTTTGTTACTTCCTGG 169438 | ||| ||| | || | ||||| ||| | || |||||| | ||||| ||||| ||| Sbjct 167499 TCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558 Query 169439 TACACCCACGGACTCGCTTCCAGTT---ACTTAGAAGGCGCTAACTTCCTCACTGCTGCT 169495 || ||||| ||| | || ||||| | || ||||| || ||| | || || | Sbjct 167559 TATACCCATGGATTGGC---CAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACA 167615 Query 169496 GTCAGTACACCTGCTGACGCTATGGGACACTCACTGCTCTTGCTATGGGGTCCAGAAGCA 169555 || ||| |||||| | | | | ||||| | | || || |||||||| |||||| Sbjct 167616 GTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCA 167675 Query 169556 CAAGGCGATTTCGTTCGCTGGTGTCAATTGGGTGGTCTCTGGAACTTTGTAGCACTTCAT 169615 ||||| || || ||| ||||||||||| || || || |||| ||||| || |||||| Sbjct 167676 CAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCAT 167735 Query 169616 GGTGCATTTGCATTGATTGGTTTCATGCTTAGGCAGTTTGAATTGGCACGTCTTATTGGC 169675 ||||| || ||| | || ||||| ||| | | || || || | || || || Sbjct 167736 GGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAA 167795 Query 169676 ATCCGTCCTTATAATGCTATTGCATTCTCTGGTCCTATTGCTGTATTTGTCAGTGTCTTT 169735 | || ||||||||||| || ||||| |||||||| |||||||| ||||| ||| || Sbjct 167796 TTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTC 167855 Query 169736 CTTATCTACCCACTTGGACAGTCCTCATGGTTCTTTGCTCCCTCCTTTGGAGTATCAGCA 169795 || || || ||||| || ||||| ||||||||||| || ||||| || |||| Sbjct 167856 CTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCT 167915 Query 169796 ATCTTCAGGTTCCTGTTGTTCCTGCAAGGATTCCACAACTGGACGTTGAATCCATTCCAC 169855 || || | ||| | | || | ||||| || || || ||||| |||||||||| || Sbjct 167916 ATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCAT 167975 Query 169856 ATGATGGGTGTAGCAGGAATCTTGGGCGGAGCATTGCTTTCTGCTATCCATGGTGTTACA 169915 |||||||| || || || | ||||||| || | || | ||||| ||||| | ||| Sbjct 167976 ATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACC 168035 Query 169916 GTAGAGAACACATTGTATGAAGACGGTGAGCAGGCAAATACTTTCAAGGCGTTTGATTCG 169975 ||||| || | || | |||||||||||| ||||||||| ||| ||| ||| | | Sbjct 168036 GTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCA 168095 Query 169976 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 170035 || || | ||||| |||||||| |||||||| || |||||||| ||||| || || || Sbjct 168096 ACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTT 168155 Query 170036 GGTATTGCGTTTTCTAACAAGCGTTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 170095 || |||| ||||| || || ||||| | ||||| || ||||| ||||| || || | Sbjct 168156 GGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 168215 Query 170096 GGTCTTTGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 170155 ||| | |||| || |||| | | || | ||| | || || ||||| || || Sbjct 168216 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGAC 168275 Query 170156 TTCGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAA 170215 ||| | ||||| ||| | ||||| |||||||| |||||||| || |||||||||||| Sbjct 168276 TTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAA 168335 Query 170216 AACATCCTATTGAATGAAGGACTTCGTGCATGGTTGGCACCTGCTGATCAACCACATGAA 170275 || || || || || ||||| ||||||| ||| |||| || ||||| || |||||| Sbjct 168336 AATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 168395 Query 170276 AACTTCATCTTCCCAGAAGAAGTTCTTCCGAGAGGTAACGCACT 170319 ||| | || ||||| || || ||||| || | || ||||| || Sbjct 168396 AACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq1658 Length=355568 Score = 459 bits (508), Expect = 3e-124 Identities = 690/976 (71%), Gaps = 12/976 (1%) Strand=Plus/Minus Query 167884 ACTAACAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 167943 ||| | ||||| || ||| | || ||||| || || ||||||| || || | ||| | Sbjct 187903 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 187844 Query 167944 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 168002 |||||| ||||| || || | |||||| | |||||||| | | || || || || || Sbjct 187843 GCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTAT 187785 Query 168003 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 168062 |||||||| || | || || || | || || || || || || || ||| | || | Sbjct 187784 TCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTAT 187725 Query 168063 CCCTTCTTCTAATGCTATTGGACTTCACTTCTATCCCATCTGGGAAGCAGCATCACTCGA 168122 ||| ||| | | | | || | ||||| ||||| || || ||||| || | | || Sbjct 187724 TCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGA 187665 Query 168123 TGAGTGGTTGTATAACGGTGGTCCTTTCCAACTAGTAGTCTTTCACTTCCTCATCGGTAT 168182 ||||||||| || ||||||||||||| ||||| | || | ||||| | | ||| | Sbjct 187664 TGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 187605 Query 168183 CT-ATGCATACATGGGACGTGAATGGGAACTTTCATATCGTTTAGGTATGCGTCCATGGA 168241 ||| || ||||| ||||| ||||||||| | ||| |||||||||| || |||| Sbjct 187604 AGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGA 187546 Query 168242 TCTGTGTTGCATACTCTGCACCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTGTATCCTT 168301 | ||||||||| | || | | || || || | ||| || ||| | | || || Sbjct 187545 TTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAA 187486 Query 168302 TCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGGAACATTCAACTACA 168361 | |||||||| || || | ||||| ||||| || | |||||| || || ||||||| | Sbjct 187485 TTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTA 187426 Query 168362 TGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCATATGCTCGGCGTTG 168421 || | || ||| | ||||||||||| || || |||||||| || || ||| | || || | Sbjct 187425 TGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 187366 Query 168422 CTGGGG--------TATTTGGTGGCAGTTTGTTTAGTGCTATGCACGGAAGTTTGGTTAC 168473 |||| | |||| || || | | | |||||||||||| || ||||| | Sbjct 187365 CTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTCCTTGGTAAT 187306 Query 168474 TTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGGTTACAAGTTCGG 168533 |||| | | |||| || || || |||| ||||| || | ||||||| ||||| Sbjct 187305 TTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGG 187246 Query 168534 ACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTT 168593 ||||| |||||||| || || || ||||| ||||||||||| |||| || |||||||| Sbjct 187245 GCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTT 187186 Query 168594 CCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGT 168653 ||||| || |||||| |||| || || || ||||||||| | ||||| |||||||| Sbjct 187185 TCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGT 187126 Query 168654 TGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTT 168713 || || || ||||| | || | || | || ||||| |||||| | || ||||| Sbjct 187125 AGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTT 187066 Query 168714 CAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGT 168773 ||| |||||||| || | ||||| |||| |||||||| | || || ||||| ||| | Sbjct 187065 CAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATAT 187006 Query 168774 TCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCC 168833 | ||||| ||| || |||||||||||||||||||| ||||| || || |||||||| Sbjct 187005 CATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCC 186946 Query 168834 ACTCGATCTTGCTGCT 168849 || || || || ||| Sbjct 186945 TCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574451963888040