Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07-
18] 3,013 sequences; 337,010,935 total letters
Query= NC_015282.1
Length=174079
Score E
Sequences producing significant alignments: (Bits) Value
seq2002 522 3e-143
seq1325 517 1e-141
seq1658 504 8e-138
>seq2002
Length=1023113
Score = 522 bits (578), Expect = 3e-143
Identities = 725/1005 (72%), Gaps = 9/1005 (1%)
Strand=Plus/Plus
Query 165206 GATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 165265
||||||||| | | || |||||||||||||| ||||||||||| || | || |||
Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTT 167499
Query 165266 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGG 165325
| ||||||| | || | || |||||| |||| || || || || | || |||
Sbjct 167500 CGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558
Query 165326 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAG 165383
||||| || || ||||| ||||| ||| |||| ||| |||| ||||||| | ||| |||
Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAG 167616
Query 165384 TTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTC 165443
|||||||||| || | | | | || ||| | || | || |||||||| || || |
Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCAC 167676
Query 165444 AAGGGGA-TTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCAC 165502
|||| || ||| || | ||| ||| | || || || ||| ||||||| || || ||
Sbjct 167677 AAGGAGACTTTACTC-GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCAT 167735
Query 165503 GGGGCTTTCGCTCTAATTGGTTTCATGCTTCGTCAGTTTGAATTAGCACG-TCTCATCGG 165561
|| |||||||| || || ||||| ||| | ||||| || || | || || || ||
Sbjct 167736 GGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAA 167795
Query 165562 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 165621
| | || || || ||||| || || || |||||||| || |||||||||||| || ||
Sbjct 167796 T-TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 167854
Query 165622 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGC 165681
|| || || || || ||||| || ||||||| || || || ||| || | |||||
Sbjct 167855 CCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGC 167914
Query 165682 AATCTTCAGGTTCCTTCTCTTCCTACAAGGATTCCATAACTGGACCTTGAATCCCTTTCA 165741
|| || | ||| ||||||| | ||||| || ||||| ||||| ||||||| |||||
Sbjct 167915 TATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCA 167974
Query 165742 TATGATGGGTGTTGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTAC 165801
||||||||| ||||| ||| | |||| | || | || | || || ||||| | |||
Sbjct 167975 TATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTAC 168034
Query 165802 AGTAGAGAATACTCTGTATCAAGATGGTGACGATGCAAATACTTTCAAGGCATTTGACTC 165861
||||| |||| | | | | |||| ||||| | |||||||| ||| ||| ||| || |
Sbjct 168035 CGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 168094
Query 165862 TACTCAAGAGGAAGAAACCTACTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 165921
|| |||| |||||||| || |||||||| || || ||||| || ||||| || || ||
Sbjct 168095 AACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTT 168154
Query 165922 CGGTATTGCGTTTAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 165981
|| |||| ||| ||||| | ||||| |||||||||||| | ||||| || || |
Sbjct 168155 TGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 168214
Query 165982 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 166041
||| | |||| ||| | | || | | ||| | ||| | ||||| ||||| |||||
Sbjct 168215 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGA 168274
Query 166042 CTTTGTATCCCAAGAGATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAA 166101
||| | ||||| || ||| | ||||| ||||| || || |||||||| |||||||| ||
Sbjct 168275 CTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAA 168334
Query 166102 AAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGA 166161
||| |||||||| || |||||| ||||||||||| |||| | ||||| || |||||
Sbjct 168335 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 168394
Query 166162 GAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGCGCT 166206
||| || | |||||||| || ||||| || | || ||||| ||
Sbjct 168395 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439
>seq1325
Length=385796
Score = 517 bits (572), Expect = 1e-141
Identities = 702/970 (72%), Gaps = 7/970 (1%)
Strand=Plus/Plus
Query 163805 CACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG- 163863
||| || ||| | || ||| |||| ||||| || ||| |||||||||| || || |||
Sbjct 7005 CACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAAC-CTTATTGA 7063
Query 163864 CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGT 163922
| ||||| ||||| || || | |||||| | |||||||| | || || || ||||||
Sbjct 7064 CTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGT 7122
Query 163923 ATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTT 163982
|||||||||| |||| | || || || | || || ||||| || || || ||||| ||
Sbjct 7123 ATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATT 7182
Query 163983 GTTCCCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTT 164042
|||| | || || || || | ||||| || || || |||||||| || || ||
Sbjct 7183 ATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTT 7242
Query 164043 GATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGT 164102
||||| ||| | |||||||| ||||||| |||| | || | |||| | | |||
Sbjct 7243 GATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGT 7302
Query 164103 ATCT-ATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTG 164161
| ||| || |||||||||||||||||||| || |||||| |||||||| |||||
Sbjct 7303 GTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361
Query 164162 GATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCC 164221
|||| |||||| || || || || |||||||| || | | || ||| || |||| |
Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCT 7421
Query 164222 TTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTA 164281
| |||||||| || ||||| | ||||| || || |||||| | || |||||||
Sbjct 7422 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTT 7481
Query 164282 CATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGT 164341
||| | || ||||| || |||||||||||||| ||||| || || | ||| | || ||
Sbjct 7482 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 7541
Query 164342 TGCTGGCGTATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTC 164401
||||| || || | || ||||| | ||||| ||||| ||||| |||| ||||||
Sbjct 7542 AGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAG 7601
Query 164402 GCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGA 164461
|| | | |||||||| ||| ||| || || | ||||||| || | |||||
Sbjct 7602 TTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGA 7661
Query 164462 AGAAGAAACATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATA 164521
|||||||| || || ||||| || ||||| ||||| || || || ||||||| |||||
Sbjct 7662 GGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATA 7721
Query 164522 CGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGG 164581
||| ||||||||||| ||||| || | ||||||| | ||||| |||||||| || ||
Sbjct 7722 TGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGG 7780
Query 164582 CATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTT 164641
|| ||||| || || | ||| || || ||||| |||||| | || |||||||| ||
Sbjct 7781 TATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTT 7840
Query 164642 CAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAA 164701
|||||| || | | ||| |||| |||||||| | | |||||||| || | | ||
Sbjct 7841 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAA 7900
Query 164702 CCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTGGA 164761
|| ||| | ||||||||||||||||| || ||||| ||||| |||||||||| ||
Sbjct 7901 CCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGA 7960
Query 164762 TCTCGCTGCT 164771
|| || |||
Sbjct 7961 CCTAGCCGCT 7970
>seq1658
Length=355568
Score = 504 bits (558), Expect = 8e-138
Identities = 712/992 (72%), Gaps = 20/992 (2%)
Strand=Plus/Minus
Query 163794 TGGGTGACTTCCACAAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCT 163853
||| | ||| ||| | ||||| || ||| |||| ||||| || ||| |||||||||||
Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856
Query 163854 ACGCTGCTTG-CAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGG 163911
|| || ||| | ||||| ||||| || || | |||||| | |||||||| | | |
Sbjct 187855 AC-CTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAG 187798
Query 163912 ACATCGATGGTATTCGTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCT 163971
| || ||||||||||||||||||||| | || || || | || || || || || || |
Sbjct 187797 ATATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTT 187738
Query 163972 CTGGTGCAGTTGTTCCCTCGTCCAATGCAATTG---GTCTTCACTTCTACCCCATTTGGG 164028
| ||| | || |||| | | |||| ||| | | ||||| || || || || |
Sbjct 187737 CGGGTACCATTATTCCTACTTT---TGCAGTTGTAGGGTTGCACTTTTATCCAATATGAG 187681
Query 164029 AAGCCGCATCCCTTGATGAATGGCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCC 164088
|||| || | ||||||| ||| | |||||||||||||||| |||| | || | |
Sbjct 187680 AAGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTAC 187621
Query 164089 ACTTCCTGATCGGTATCT-ATGCATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTT 164147
|||| | | ||| | ||| || |||||||||||||||||||| || ||||||
Sbjct 187620 ACTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTA 187562
Query 164148 GGTATGCGTCCTTGGATTTGTGTTGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTC 164207
|||||||| ||||||||| |||||| || | || | ||||||| || | || ||
Sbjct 187561 GGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTT 187502
Query 164208 TTCCTGGTCTATCCTTTCGGTCAAGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCT 164267
||| || |||| || | |||||||| || | ||| | ||||| || | ||||||
Sbjct 187501 TTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCT 187442
Query 164268 GGCACCTTCAACTACATGTTGGTGTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTC 164327
|| || ||||||| ||| | || ||| | || |||||||||||||| ||||| || ||
Sbjct 187441 GGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTT 187382
Query 164328 CATATGCTCGGCGTTGCTGGCG--------TATTTGGCGGTTCTCTGTTCAGTGCAATGC 164379
|| ||| | || || ||||| | |||| ||| | ||||| | ||||| ||||
Sbjct 187381 CACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGC 187322
Query 164380 ACGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACT 164439
| ||||| |||| | |||| || || | |||||||| |||| ||| || ||
Sbjct 187321 ATGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATG 187262
Query 164440 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACATACAACATTGTTGCCGCTCACGGTTACT 164499
| ||||||| || || ||||| |||||||| || || ||||| || ||||| ||||| |
Sbjct 187261 AGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATT 187202
Query 164500 TTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 164559
| | || ||||||| ||||| || |||||| |||| ||||| || |||||||||
Sbjct 187201 TCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCT 187142
Query 164560 TTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGCAT 164619
| ||||| |||||||| || || || ||||| | || | ||| || || ||||| |
Sbjct 187141 TAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCT 187082
Query 164620 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCA 164679
||||| | || |||||||| |||||||| || | | ||| |||| |||||||| | |
Sbjct 187081 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTA 187022
Query 164680 ACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTA 164739
| |||||||| || | | ||||| ||| || ||||||||||||||||| || ||||
Sbjct 187021 ATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 186962
Query 164740 ACGCTCACAACTTCCCTCTGGATCTCGCTGCT 164771
| ||||| ||||||||||| || || || |||
Sbjct 186961 ATGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556903824819720
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