Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq1325 515 4e-141 seq1658 452 4e-122 >seq1325 Length=385796 Score = 515 bits (570), Expect = 4e-141 Identities = 708/985 (72%), Gaps = 5/985 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | | | |||| | |||||| ||||| |||||| |||| ||||| ||||| || Sbjct 6985 TTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTG 7044 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||||||| ||||| || ||| | | ||| || ||| | || || |||||||| || Sbjct 7045 ATGATCCCAACCTTATTGACTGCAACTTC-TGTATTTATTTTAGCCTTCATTGCTGCTCC 7103 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 | || ||||| || || || | |||| ||| | || ||||| | || |||||||| Sbjct 7104 TCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAA 7163 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || || || ||||| || |||| |||| || || || | ||||| || ||||| Sbjct 7164 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 7223 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 ||||||||||| | | |||||||||||||| || || |||||||| | | | | Sbjct 7224 ATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGT 7283 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||| || | || | | || |||||| | |||||||| | | | | Sbjct 7284 TCTAAACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 7343 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || || Sbjct 7344 TCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGT 7403 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | |||| | ||||||| || || ||||||||||||||||||||||| Sbjct 7404 TGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAAT 7463 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||| | || |||||||| ||| | |||||||| || ||||||||||| ||||||||||| Sbjct 7464 CTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCC 7523 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || | ||| ||| ||||| ||| |||||| || ||||| | || |||||||| Sbjct 7524 ATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGG 7583 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || || | | |||||| || | || Sbjct 7584 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGG 7643 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||| | ||||| |||||||| ||||||||||| || || ||||| || ||||| Sbjct 7644 TTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGG 7703 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCA-CTTCTTCCTAG 169268 |||| ||||| || ||||| |||||||||||||| | |||| | ||||||| ||| Sbjct 7704 CCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCG--TTCTTTACCTTCTTCTTAG 7761 Query 169269 CAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 169328 | | | || || ||| || | ||||| || || | ||||| |||| ||||| |||| Sbjct 7762 CTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCA 7821 Query 169329 ACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTA 169388 |||| || || || || || |||||||| || || ||| | | ||| | |||| || Sbjct 7822 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATA 7881 Query 169389 CATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACG 169448 | |||| ||| | ||||| || ||| ||||||||||||| |||||||| ||||| | Sbjct 7882 CTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATG 7941 Query 169449 CTCACAACTTCCCACTAGACTTAGC 169473 |||| |||||||| | |||| |||| Sbjct 7942 CTCATAACTTCCCTCAAGACCTAGC 7966 >seq1658 Length=355568 Score = 452 bits (500), Expect = 4e-122 Identities = 693/984 (70%), Gaps = 12/984 (1%) Strand=Plus/Minus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| | |||||| |||| ||||| ||||| || |||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 ||||| || ||| | | ||| || ||| | || || |||||||| || | | || Sbjct 187855 ACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| || || || | |||||||| | || ||||| | || ||||| || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||| | || |||| ||| | | || | ||||| || ||||| || ||||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGC 187677 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 || | |||||||||||||| || ||||||||||| | | | | | ||||| Sbjct 187676 GGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 187617 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTAT 168858 || | || | | || |||||| | |||||||| | | | | |||||||| Sbjct 187616 TTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTAT 187557 Query 168859 GAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCT 168918 | | |||||||| |||||| |||| ||| | | | || || ||| || ||| | Sbjct 187556 GCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTT 187497 Query 168919 TGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAAC 168978 | |||||| ||||||| || || | ||||||||||||||||| ||| ||||| || Sbjct 187496 GATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTAC 187437 Query 168979 ATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCATAT 169038 |||||||| ||| | |||||| | || ||||||||||| ||||||||||| || || || Sbjct 187436 TTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACAT 187377 Query 169039 GGCAGGAGTAGCAGGTA--------TGTTCGGTGGATCTCTATTCTCC-GCAATGCATGG 169089 | ||| ||||| ||| | ||||| | ||||| |||| || |||||||| Sbjct 187376 GTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATGG 187318 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | |||| ||| | | || || || || || || | |||||| || | || Sbjct 187317 TTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGG 187258 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| ||||| ||||| |||||||| ||||||||||| || || ||||| || |||| Sbjct 187257 TTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGC 187198 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| ||||| || ||| | ||||||||| |||| | | | ||||||||| |||| Sbjct 187197 CCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGC 187138 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| || | ||||| | || | ||||| |||| ||||| ||||| Sbjct 187137 TGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAA 187078 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 ||| || || || || || |||||||| || || ||| | | ||| | ||| ||| Sbjct 187077 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 187018 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| || Sbjct 187017 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 186958 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 ||| |||||||| |||||| |||| Sbjct 186957 TCATAACTTCCCTCTAGACCTAGC 186934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564420341718240