Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1325 428 5e-115 seq1658 354 1e-92 seq2002 300 2e-76 seq603 98.7 1e-15 >seq1325 Length=385796 Score = 428 bits (474), Expect = 5e-115 Identities = 689/986 (70%), Gaps = 7/986 (1%) Strand=Plus/Plus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | | | ||||| ||||| ||||| ||||| |||| ||||| ||||| | Sbjct 6985 TTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTG 7044 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 ||||||||| || | || ||| | | || || | || |||||||| || ||| Sbjct 7045 ATGATCCCAACCTTATTGACTGCAACTTCTGTATTTATTTTAGCCTTCATTGCTGCTCCT 7104 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 171999 | || ||||| || || || | |||| ||| | || ||| | | || || ||||| Sbjct 7105 CTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAAT 7164 Query 172000 ATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATC 172059 || || || ||||| || |||| | || || ||||| | ||||| || || || Sbjct 7165 ATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATA 7224 Query 172060 TGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATC 172119 ||||||||||| | || ||||| ||||| ||||| || ||||||||| | | | | Sbjct 7225 TGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTT 7284 Query 172120 TTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAGA 172179 | |||| | | ||| | || || ||||| | |||||||||| | | | Sbjct 7285 CTAAACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 7344 Query 172180 TTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCT 172239 | |||||| | || ||||| ||| ||||||||||| || || |||| || || | Sbjct 7345 CTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTT 7404 Query 172240 GTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 172299 || ||| | | || | | | ||||| || || |||||||||||||| ||||| ||| Sbjct 7405 GTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATC 7464 Query 172300 TCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCT 172359 || |||| |||||||||||| | || ||||| || ||||| ||||| || |||||||| Sbjct 7465 TCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCA 7524 Query 172360 TTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGG--ATCTTTATTCTCAGCAATGCACG 172417 || | |||| ||| ||||| || |||| | ||| ||||||| | || ||||| | Sbjct 7525 TTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGT--GCTATGCATG 7582 Query 172418 GTTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACG 172477 |||| || || || ||| | | ||||| || || || || ||||| || | | Sbjct 7583 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGG 7642 Query 172478 GATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTG 172537 | |||| ||| | ||||| |||||||| || || || ||||| || || ||||| || | Sbjct 7643 GTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCG 7702 Query 172538 GTCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCA-CTTCTTCCTA 172596 | || | ||||| || |||||| |||||||||||| | |||| | ||||||| || Sbjct 7703 GCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCG--TTCTTTACCTTCTTCTTA 7760 Query 172597 GCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 172656 || | || ||||| ||| || | ||||| || || | ||||| |||| ||||| ||| Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 172657 AACCTTAACGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCT 172716 ||| | || |||||||| ||||||||||| || || ||| | | ||| | ||| | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 172717 ACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAAT 172776 || |||| ||| | ||||| || ||| | ||||||||||||||||||||| | ||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 172777 GCACACAACTTCCCATTAGACCTTGC 172802 || || |||||||| |||||| || Sbjct 7941 GCTCATAACTTCCCTCAAGACCTAGC 7966 >seq1658 Length=355568 Score = 354 bits (392), Expect = 1e-92 Identities = 662/971 (68%), Gaps = 10/971 (1%) Strand=Plus/Minus Query 171841 ACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTCATGATCCCATGTTTGCTCACA 171900 ||| | ||| | ||||| |||| ||||| ||||| | |||||||| || | || Sbjct 187903 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 187844 Query 171901 GCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATC 171960 ||| | | || || | || |||||||| || |||| | ||||| || || || Sbjct 187843 GCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATT 187784 Query 171961 AGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCAGTTGTT 172020 | ||||| ||| | || ||| | | || || || || || || || ||| | || || Sbjct 187783 CGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATT 187724 Query 172021 CCATCATCAAACGCAATAGGTCTCCACTTCTACCCTATCTGGGAAGCAGCAACCGTAGAT 172080 || | | | |||| | ||||| || || || || ||||| || || ||| Sbjct 187723 CCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGAT 187664 Query 172081 GAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATCGGTATC 172140 || ||||| ||||| |||||||||||| | | | | | ||||| | | ||| | Sbjct 187663 GAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTA 187604 Query 172141 TCAGCATACATGGGAAGACAGTGGGAACTATCATACAGATTAGGTATGAGACCATGGATA 172200 || || ||||| | |||||||||| | | | |||||||| | || ||||| Sbjct 187603 GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATT 187544 Query 172201 TGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGCTGTGTTCCTTGTGTATCCATTC 172260 ||| ||||||| ||| | | |||| || |||||| ||| | | || ||| | Sbjct 187543 GTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATT 187484 Query 172261 GGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTTATG 172320 ||||| || ||| | |||||||||||| |||| ||||| ||||| |||||||||||| Sbjct 187483 GGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATG 187424 Query 172321 TTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCA 172380 | || ||| | || ||||| ||||| || |||||||| || |||||| ||| ||||| Sbjct 187423 ATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 187364 Query 172381 GGAA--------TGTTTGGAGGATCTTTATTCTCA-GCAATGCACGGTTCTTTAGTTACA 172431 || | || || | ||| | |||| || ||||| ||||| || || | Sbjct 187363 GGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGTTCCTTGGTAATT 187305 Query 172432 TCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGGATACAAGTTCGGA 172491 ||| | | || || || || || ||| ||||| || | || |||| ||||| Sbjct 187304 TCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGG 187245 Query 172492 CAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTC 172551 ||||| |||||||| || || || ||||| || || ||||| || | || | ||||| Sbjct 187244 CAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTT 187185 Query 172552 CAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTT 172611 || ||| || ||||||| |||| | | | ||||||||| |||| | || ||||| Sbjct 187184 CAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTA 187125 Query 172612 GTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTC 172671 ||| || | ||||| | || | ||||| |||| ||||| |||||| | || |||||| Sbjct 187124 GTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTC 187065 Query 172672 AACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTT 172731 || ||||||||||| || || ||| | | ||| | || ||| |||| ||| | Sbjct 187064 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATC 187005 Query 172732 CTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCA 172791 ||||| | || ||||| ||||||||||||||||||||| | ||||| || |||||||| Sbjct 187004 ATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCT 186945 Query 172792 TTAGACCTTGC 172802 ||||||| || Sbjct 186944 CTAGACCTAGC 186934 >seq2002 Length=1023113 Score = 300 bits (332), Expect = 2e-76 Identities = 688/1038 (66%), Gaps = 22/1038 (2%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| | | || ||||||||| ||| || |||||||| || | || |||||||| Sbjct 167428 TTTGATAGTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGG 167487 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || || | |||||||| | | | || |||||||| ||| || ||||| Sbjct 167488 CTATTGCT-CTTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTT 167546 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || || ||| Sbjct 167547 GTAACTTCATGGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTA 167606 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || |||| || || |||| | | | || | | |||| || ||||| Sbjct 167607 ACCGCGACAGTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGT 167666 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 || ||||||||||| || ||||||| ||| | || || || |||| ||||| Sbjct 167667 CCCGAAGCACAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTT 167726 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | ||||| | || | ||| |||||||| ||| | ||||| || ||| | || || Sbjct 167727 GCTCTTCATGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGA 167786 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 || | | ||||| || ||| ||||||| |||| | || || || || | Sbjct 167787 TCCGTTCAATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTT 167846 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 | || |||| || |||||||| ||| |||||||||| |||||| || ||| Sbjct 167847 TCTGTATTCCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGT 167906 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 | ||||| || ||||| | || | || | ||||| || || || ||| ||||| Sbjct 167907 ATAGCAGCTATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAAT 167966 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| ||||| || || | || | || ||||||| || |||||| Sbjct 167967 CCATTTCATATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCAT 168026 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 || || || || | || | || | ||||||| ||| | | Sbjct 168027 GGCGCTACCGTAGAAAATAATTTATTTGAAGAC------------------GGTGA---T 168065 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 168066 GGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAACTTATTCAATGGTC 168125 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || ||||| || || ||||| | || ||||| || ||| | | ||| Sbjct 168126 ACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCAATAAATGTTGGTTA 168185 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| | ||||| || ||||| || | ||| | |||| | | || | || Sbjct 168186 CATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCTCTTGGAGTAGTC 168245 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 ||| | || | ||||| | || || ||||| | || || || || | ||||| ||| Sbjct 168246 GGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAATCCGTGCAGCGGAA 168305 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||||| || || || ||||||||||| || ||||| || | || |||||||| | || Sbjct 168306 GATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCT 168365 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || |||||| || ||||| ||| | |||| || || || || |||| Sbjct 168366 TGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCC 168425 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 168426 CGTGGAAACGCTCTTTAA 168443 >seq603 Length=500837 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 159665 AGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACATA 159724 |||| ||||| ||| ||| | | ||| |||||||| |||||||| ||| |||| | Sbjct 50331 AGGTTGGTCTCACAAGCCCAGGATTCATTGGAGCAGATGTTTGTCATCTCAACCTACACA 50272 Query 159725 AGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGTAGCAA 159784 | |||||||| ||||||||||| || || |||||||| | || || ||||||||| | Sbjct 50271 AAACATTCTGCATTCCACATGGTGGAGGTGGTCCTGGTATGGGCCCCATTGGTGTAAAGA 50212 Query 159785 AACATCTCACACCATTT 159801 |||| | |||||||| Sbjct 50211 AACACTTGGCACCATTT 50195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588029052521680