Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq1325 470 2e-127 seq2002 432 4e-116 seq1658 419 3e-112 >seq1325 Length=385796 Score = 470 bits (520), Expect = 2e-127 Identities = 689/968 (71%), Gaps = 5/968 (1%) Strand=Plus/Plus Query 162406 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 162465 || || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 162466 GCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCAT 162524 ||||| ||||| || || | |||||| | |||||||| | || || || || || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 162525 CCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGT 162584 ||||||| || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 162585 TCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 162644 ||| |||| || || || | ||||| ||||| || |||||||| || || |||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 162645 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCAT 162704 ||||||| | || ||||| ||||||| |||| | || | |||| | | || | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT 7304 Query 162705 CT-ATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGA 162763 ||| || ||||| ||||| |||||||| || |||||| |||||||| || |||| Sbjct 7305 AGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGA 7363 Query 162764 TCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTT 162823 | || ||||| || || || |||||||| || | | || ||| || |||| | Sbjct 7364 TTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAA 7423 Query 162824 TCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACA 162883 | |||||||| || ||||| | ||||| | || ||| | |||| ||||||| | Sbjct 7424 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTA 7483 Query 162884 TGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCG 162943 || |||| ||||| || ||||||||||| || |||||||| || | |||||| ||||| | Sbjct 7484 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 7543 Query 162944 CAGGTGTCTTCGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCAC 163003 | ||||| |||| || || || | ||||| ||||| ||||| ||||| || ||| Sbjct 7544 CTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 7603 Query 163004 TCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAG 163063 | || | || || || ||| ||| || || | ||||||| ||| | ||||| | Sbjct 7604 TGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGG 7663 Query 163064 AAGAGACATACAACATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATG 163123 |||| || || || || || || || |||||||| ||||| || |||||||| ||||||| Sbjct 7664 AAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATG 7723 Query 163124 CATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCA 163183 | ||||||||||| ||||| || | ||||||| | ||||| |||||||| || || | Sbjct 7724 CTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTA 7782 Query 163184 TCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCA 163243 | ||||| || || | || | || ||||| |||||| | || |||||||| |||| Sbjct 7783 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCA 7842 Query 163244 ACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACC 163303 |||| || | ||||| |||| |||||||| | | || ||||| || | | |||| Sbjct 7843 ACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACC 7902 Query 163304 GTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAATGCTCACAACTTCCCACTTGACC 163363 ||| || ||||||||||||||||| || || |||||||| |||||||| | |||| Sbjct 7903 ATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACC 7962 Query 163364 TGGCAGCT 163371 | || ||| Sbjct 7963 TAGCCGCT 7970 >seq2002 Length=1023113 Score = 432 bits (478), Expect = 4e-116 Identities = 706/1011 (70%), Gaps = 7/1011 (1%) Strand=Plus/Plus Query 163631 TGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTC 163690 ||||||||||| | | | || |||||||| ||| | ||||||||||| || | || | Sbjct 167438 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-C 167496 Query 163691 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGT 163750 || | ||||||| | || | || || ||| |||| |||||||| || || || || | Sbjct 167497 TTTCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 167556 Query 163751 GGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTCACAGCGGCTG 163810 |||| ||||||||| |||| | ||| ||| | || ||| ||||| | || ||| | | Sbjct 167557 GGTATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAG 167616 Query 163811 TGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGGTCCTGAGGCT 163869 | || || |||||| | | | | || ||| || || || || |||||||| || || Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCT-TTATTGTTACTGTGGGGTCCCGAAGCA 167675 Query 163870 CAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCAC 163929 || || || || || ||| ||| | || || || |||| |||||| || || || Sbjct 167676 CAAGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCAT 167735 Query 163930 GGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCGCCTGATTGGA 163989 || || || || || || ||||| ||| | || ||||| || |||||||| || | Sbjct 167736 GGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAA 167795 Query 163990 ATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTT 164049 | | || || ||||| || || || |||||||| |||||||| || ||| ||| || Sbjct 167796 TTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTC 167855 Query 164050 CTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGGAGTGGCAGCA 164109 || || || || || ||||| || |||||||||| || || |||||| | ||||| Sbjct 167856 CTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCT 167915 Query 164110 ATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAACCCCTTCCAT 164169 || || ||||| | | || ||||||| |||||||| ||||| |||| || || ||| Sbjct 167916 ATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCAT 167975 Query 164170 ATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCACGGAGTCACA 164229 |||||||||||||| ||| || | |||| || | |||| |||||||| || | || Sbjct 167976 ATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACC 168035 Query 164230 GTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCG 164289 || ||||||| || | |||||| || || ||||| || || ||| ||| | | Sbjct 168036 GTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCA 168095 Query 164290 ACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTC 164349 || || | ||||| |||||||| |||||||| || |||||||| ||||| || || || Sbjct 168096 ACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTT 168155 Query 164350 GGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATG 164409 || ||||| ||||| || || | ||| | ||||| || ||||| ||||| || || | Sbjct 168156 GGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACC 168215 Query 164410 GGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCGTGCTTACGAT 164469 ||| |||||| || |||| | | || | ||| | || || ||||| || || Sbjct 168216 GGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGAC 168275 Query 164470 TTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTTCTATACCAAG 164529 || | || || || | ||||| ||||||||||| || || |||||||| ||||| Sbjct 168276 TTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAA 168335 Query 164530 AACATCTTATTGAACGAAGGACTCCGTGCATGGTTAGCACCAGTTGACCAGC--CAGGAG 164587 || || | || |||||||| | ||||| ||| | || | || |||| || || Sbjct 168336 AATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAA 168395 Query 164588 AACGGTTTGTCTTCCCAGAAGAAGTACTGCCGAGAGGTAATGCGCTTTAAT 164638 ||| || | ||||| || || || || || | || || || ||||||| Sbjct 168396 AAC--CTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 168444 >seq1658 Length=355568 Score = 419 bits (464), Expect = 3e-112 Identities = 691/991 (70%), Gaps = 18/991 (2%) Strand=Plus/Minus Query 162394 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 162453 ||| ||||| || | ||||| || ||| | || ||||| || || ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 162454 ACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 162512 || | ||| | ||||| ||||| || || | |||||| | |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 162513 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTC 162572 || || || || |||||||| || | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 162573 TGGTGCAGTTGTTCCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 162629 ||| | || |||| ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 162630 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTATTCCA 162689 ||| || | ||||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 162690 CTTCCTGATCGGCATCT-ATGCCTACATGGGACGTGAATGGGAACTCTCTTACCGTCTTG 162748 ||| | | || | ||| || ||||| ||||| |||||||| || |||||| | Sbjct 187619 CTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAG 187561 Query 162749 GTATGCGTCCATGGATCTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCGGCAGTCT 162808 ||||||| || ||||| || ||||| | || | ||||||| || | || || | Sbjct 187560 GTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTT 187501 Query 162809 TCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTATCAGTG 162868 || || |||| || | |||||||| || | ||| | ||||| | | ||| || Sbjct 187500 TCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTG 187441 Query 162869 GTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCC 162928 |||| ||||||| ||| |||| ||| | || ||||||||||| || |||||||| || | Sbjct 187440 GTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTC 187381 Query 162929 ACATGTTGGGTGTCGCAGGTGTC--------TTCGGTGGTTCACTGTTCAGTGCAATGCA 162980 ||||||| ||||| || |||| | ||||| | || || | ||||| ||||| Sbjct 187380 ACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCA 187321 Query 162981 CGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTA 163040 ||||| ||||| | ||| | | | || || || |||| ||| || || | Sbjct 187320 TGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGA 187261 Query 163041 TGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTT 163100 ||||||| ||||| ||||| ||||| || || || || || || || |||||||| || Sbjct 187260 GGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTT 187201 Query 163101 CGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCT 163160 || || |||||||| |||||| | |||||| |||| ||||| || ||||||||| | Sbjct 187200 CGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTT 187141 Query 163161 TGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATT 163220 ||||| |||||||| || || || ||||| | || | || | || ||||| || Sbjct 187140 AGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTT 187081 Query 163221 CAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAA 163280 |||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 187080 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAA 187021 Query 163281 CACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCAA 163340 || ||||| || | | |||||||| | ||||||||||||||||| || || || Sbjct 187020 TACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAA 186961 Query 163341 TGCTCACAACTTCCCACTTGACCTGGCAGCT 163371 |||||| |||||||| || ||||| || ||| Sbjct 186960 TGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557562999992600