Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq2002 549 2e-151 seq1325 502 3e-137 seq1658 479 3e-130 >seq2002 Length=1023113 Score = 549 bits (608), Expect = 2e-151 Identities = 731/1005 (73%), Gaps = 9/1005 (1%) Strand=Plus/Plus Query 168495 GATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTT 168554 ||||||||| | |||| |||||||||||||| ||||||||||| || | || ||| Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTT 167499 Query 168555 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGG 168614 | ||||||| | || | || |||||| |||| || || | || || || ||| Sbjct 167500 CGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558 Query 168615 TATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGC-GCAAACTTTCTTA-CTGCGGCAG 168672 ||||| || || ||||| ||||| ||| |||| || |||| ||||||| | ||| ||| Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAG 167616 Query 168673 TTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCAC 168732 || |||||| || || | | | || ||| | || | || |||||||| || |||| Sbjct 167617 TTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCAC 167676 Query 168733 AAGGGGA-TTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 168791 |||| || ||| || | ||||||||| | || || || ||| ||||||| || || || Sbjct 167677 AAGGAGACTTTACTC-GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCAT 167735 Query 168792 GGGGCTTTCGCTCTAATCGGTTTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGG 168850 || |||||||| || || ||||| ||| | ||||| || || || || || || || Sbjct 167736 GGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAA 167795 Query 168851 TATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTT 168910 | | || || || ||||| || || || |||||||| || |||||||||||| || || Sbjct 167796 T-TGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 167854 Query 168911 TCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGC 168970 || || || || || ||||| || ||||||| || || || ||| || | |||| Sbjct 167855 CCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGC 167914 Query 168971 AATCTTCCGATTCCTTCTCTTCCTACAAGGATTCCATAACTGGACACTGAATCCATTTCA 169030 || || |||||| ||||||| | ||||| || ||||| |||||||||||||||||||| Sbjct 167915 TATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCA 167974 Query 169031 TATGATGGGTGTAGCAGGTATTTTGGGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTAC 169090 ||||||||| || || ||| | ||||| | || | || | || |||||||| | ||| Sbjct 167975 TATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTAC 168034 Query 169091 AGTAGAGAATACTCTGTATCAAGATGGTGAACAAGCAAATACTTTCAAAGCATTTGACAG 169150 ||||| |||| | | | | |||| ||||| |||||||| ||| || ||| || Sbjct 168035 CGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 168094 Query 169151 CACTCAGGAAGAGGAGACCTATTCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTT 169210 || || | || || || ||||||||||| || || ||||| || ||||| || || || Sbjct 168095 AACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTT 168154 Query 169211 TGGTATTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTAT 169270 ||| |||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 168155 TGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 168214 Query 169271 GGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGA 169330 ||| | |||| ||| | | || | | ||| | ||| | ||||| ||||| ||||| Sbjct 168215 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGA 168274 Query 169331 CTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTTGAGACGTTCTACACCAA 169390 ||| ||||||| || ||| | ||||| |||||||| || ||||| || ||||||||||| Sbjct 168275 CTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAA 168334 Query 169391 GAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACCTATTGATCAACCTCATGA 169450 || || ||||| ||||||||| ||||||| ||| | || || ||||| |||||||| Sbjct 168335 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 168394 Query 169451 GAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGCCCT 169495 ||| || | ||||||||||| || || ||||| || || || || Sbjct 168395 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 >seq1325 Length=385796 Score = 502 bits (556), Expect = 3e-137 Identities = 694/974 (71%), Gaps = 5/974 (1%) Strand=Plus/Plus Query 167103 ACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTG 167162 |||| |||||| ||| |||| ||| | || ||||| || ||| |||||||||| || || Sbjct 7000 ACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTA 7059 Query 167163 CTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGA 167221 | | ||||| ||||| || || | |||||| | | |||||||| || || || || Sbjct 7060 TTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGA 7118 Query 167222 TGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGC 167281 |||||| || |||| ||| | || || || | || || ||||| || || || ||||| Sbjct 7119 TGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGC 7178 Query 167282 AGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAC 167341 || ||||| ||||| ||||| || | ||||| ||||| || ||||||||||| | Sbjct 7179 CATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTC 7238 Query 167342 CCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTCCTGAT 167401 | || |||||||| ||||| || ||||||| |||| | ||| | |||| | | Sbjct 7239 GGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACT 7298 Query 167402 TGGCATCT-ATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATGCGTC 167460 ||| | ||| ||||||||||||||||||||||| || |||||| |||||||| | Sbjct 7299 TGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCC 7357 Query 167461 CCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCT 167520 | ||||| ||||||||| || ||||| || || || || ||| ||| ||| | ||| Sbjct 7358 CTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCT 7417 Query 167521 ATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACATTCA 167580 | | | |||||||| || ||||| | |||||||| || |||||| |||| |||| Sbjct 7418 ACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCA 7477 Query 167581 ACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCG 167640 ||| ||| |||| ||||| || |||||||||||||| ||||| || || | ||| | | Sbjct 7478 ACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAG 7537 Query 167641 GCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACCT 167700 | || ||||| || |||| || ||||| | ||||| ||||| ||||| |||| || | Sbjct 7538 GTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTT 7597 Query 167701 CTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTC 167760 || || | | |||||||| ||| ||| || || | ||||||| ||| | | Sbjct 7598 CTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGC 7657 Query 167761 AGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCC 167820 | || ||||| || ||||| || || |||||||||||||| ||||| || ||||||| | Sbjct 7658 AAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTC 7717 Query 167821 AATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTG 167880 |||| || ||||||||||| || || | | ||||||||| || || |||||||| | Sbjct 7718 AATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAG 7776 Query 167881 TTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCA 167940 | ||||| |||| |||||| | || ||||||| Sbjct 7777 TAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCA 7836 Query 167941 ACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGC 168000 | |||||||| ||| | |||||||| ||| || | | ||||||||| || | Sbjct 7837 ATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCA 7896 Query 168001 TCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTC 168060 | |||| |||| | ||||||||||||||||| || ||||||||||| |||||||||| Sbjct 7897 TTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTC 7956 Query 168061 TCGACCTTGCTGCT 168074 ||||| || ||| Sbjct 7957 AAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 479 bits (530), Expect = 3e-130 Identities = 696/988 (70%), Gaps = 12/988 (1%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | || |||||| | |||||||| ||| | || ||||| || ||| ||||||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 167157 ACGTTGCTTGCAGCAACCATCTGT-TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGA 167215 || || | | ||||| ||||| || || || |||||| | | |||||||| | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 167216 CATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTC 167275 || |||||||| || ||||| ||| | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 167276 TGGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGC 167335 ||| | || ||||| ||| | | | | || | ||||| ||||| || || ||||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGC 187677 Query 167336 AGCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTT 167395 || | || |||||||| ||||| |||||||||| |||| | ||| | ||||| Sbjct 187676 GGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 187617 Query 167396 CCTGATTGGCATCT-ATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTA 167454 | |||| | ||| ||||||||||||||||||||||| || |||||| |||| Sbjct 187616 TTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTA 187558 Query 167455 TGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCC 167514 |||| || ||||| ||||||||| | |||| | || || || ||||||| ||| Sbjct 187557 TGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCT 187498 Query 167515 TCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTA 167574 | |||| || | |||||||| || | ||| | |||||||| | |||||||||| Sbjct 187497 TGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTA 187438 Query 167575 CATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATA 167634 | ||||||| ||| |||| ||| | || |||||||||||||| ||||| || || || | Sbjct 187437 CTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACA 187378 Query 167635 TGCTCGGCGTTG--------CTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGG 167686 || | || || | |||| ||||||||| | ||||| | ||||| ||||| || Sbjct 187377 TGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGG 187318 Query 167687 TTCTCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGG 167746 ||| |||| | ||| || || | |||||||| |||| ||| || || | || Sbjct 187317 TTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGG 187258 Query 167747 TTACAAGTTCGGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGG 167806 ||||| ||||| || || ||||| || ||||| || || |||||||||||||| |||| Sbjct 187257 TTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGC 187198 Query 167807 TCGCCTGATCTTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGC 167866 || ||||||| ||||| | |||||| |||| || || | ||||||||||| || Sbjct 187197 CCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGC 187138 Query 167867 AGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTCAA 167926 || |||||||| || ||||| |||| ||||| Sbjct 187137 TGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAA 187078 Query 167927 CCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTGCCTAC 167986 | | || |||||||| |||||||| ||| | |||||||| ||| || | ||| Sbjct 187077 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 187018 Query 167987 TTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGC 168046 |||||| || | | ||||||||| || ||||||||||||||||| || |||||||| Sbjct 187017 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 186958 Query 168047 TCACAACTTCCCTCTCGACCTTGCTGCT 168074 ||| ||||||||||| ||||| || ||| Sbjct 186957 TCATAACTTCCCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560586886101200