Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1325 381 9e-101 seq1658 342 8e-89 >seq1325 Length=385796 Score = 381 bits (422), Expect = 9e-101 Identities = 659/950 (69%), Gaps = 7/950 (1%) Strand=Plus/Plus Query 215334 TTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCG 215393 |||| ||||||||||| | ||||| || | | | | || || || || || Sbjct 7025 TTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACTTCTGTATTTATTT 7084 Query 215394 TAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTT 215453 |||| ||||| ||||| |||| || ||||| || || || | || | ||| | || | Sbjct 7085 TAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGT 7144 Query 215454 CTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCG 215513 || || | || || ||||| || || || ||||| || | |||| ||| || || | Sbjct 7145 CTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAG 7204 Query 215514 GATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTG 215573 | || ||||| || || || ||||||||||| | ||||| || ||| | ||||| || | Sbjct 7205 GGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAG 7264 Query 215574 GACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTC-TGC-ATACTGCGGAAG 215631 | |||| |||| || | | |||| | ||||| | | || ||| || || | Sbjct 7265 GTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGTAGCATGTTATA-TG-GGTCG 7322 Query 215632 ACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGC 215691 ||||||||||| || | | | |||||| | |||||||| |||||| || || || Sbjct 7323 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGC 7382 Query 215692 ACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTC 215751 || || | || || || || ||| | | || | | | ||||| || || || Sbjct 7383 TCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTC 7442 Query 215752 TGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGA 215811 ||||| |||||| || ||||||||| | || ||||||| ||| |||| ||||||||||| Sbjct 7443 TGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGA 7502 Query 215812 GCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTC 215871 ||||||||| || ||||| ||||| | |||||||||||| |||||||| |||| || || Sbjct 7503 GCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTC 7562 Query 215872 ATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGA 215931 | | ||| ||||| ||||| | || || ||| | | ||||| || || || | Sbjct 7563 TCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATA 7622 Query 215932 GCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGT 215991 | |||||| || | ||||||| ||| | |||||||| ||||| || || || || Sbjct 7623 AAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGT 7682 Query 215992 AGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAG 216051 |||||| || ||||| || || || | ||||| ||||| || |||||||||||| | Sbjct 7683 AGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCG 7742 Query 216052 AAGTCTTCA-CTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGG 216110 |||| | ||||||| | || || | ||||| | |||| ||| ||||| | | Sbjct 7743 --TTCTTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAG 7800 Query 216111 GTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACG 216170 || | |||||||| |||||| | || |||||||| |||||||| ||||| || || Sbjct 7801 GTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATA 7860 Query 216171 CATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGG 216230 ||| || |||| ||||||||| || | ||||| || ||||||||| Sbjct 7861 GTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGG 7920 Query 216231 AAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCT 216280 |||| ||||| || ||||| ||||| |||||||| |||| | || ||| Sbjct 7921 AAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 342 bits (378), Expect = 8e-89 Identities = 666/977 (68%), Gaps = 14/977 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | || |||| ||||||||||| | ||||| ||| | | | | Sbjct 187903 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 187844 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || |||| ||||| ||||| |||| | ||||| || || || Sbjct 187843 GCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATT 187784 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| | || ||| || | || || || || || || || ||| | || | Sbjct 187783 CGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATT 187724 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| || | | || || ||||| || || || || ||||| || ||||| Sbjct 187723 CCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGAT 187664 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 || ||| | ||||| ||||| |||| |||| || | | ||||| | ||||| | Sbjct 187663 GAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTA 187604 Query 215615 TC-TGC-ATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGA 215672 | || ||| || || | ||||||||||| || | | |||||||| | ||||||| Sbjct 187603 GCATGTTATA-TG-GGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGA 187546 Query 215673 TCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCAT 215732 | |||||| || | || | | | || || ||| || ||| | | || ||| Sbjct 187545 TTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAA 187486 Query 215733 TCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACA 215792 | ||||| || || | ||||| |||||| || | ||||||||| || ||||||| | Sbjct 187485 TTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTA 187426 Query 215793 TGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGG 215852 || |||| ||| |||||||||||||||| || ||||| ||||| |||||||||||||| | Sbjct 187425 TGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAG 187366 Query 215853 --------CTGGTGTCTTCGGTGGTTCATTGTTCT-CTGCAATGCACGGTTCACTTGTTA 215903 ||||||| ||||| | || | |||| ||| ||||| ||||| | || | Sbjct 187365 CTGGTGACCTGGTGTATTCGGCCGCTC-TCTTTCTAGTGCTATGCATGGTTCCTTGGTAA 187307 Query 215904 CATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCG 215963 ||| | | || || || || || || | |||||| || | ||||||| |||| Sbjct 187306 TTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCG 187247 Query 215964 GACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCT 216023 | |||||||| ||||| || || || |||||||| || ||||| || | || | |||| Sbjct 187246 GGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCT 187187 Query 216024 TCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTG 216083 | ||||| | ||||||| |||| | | | ||||||||| | || || | |||| Sbjct 187186 TTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTG 187127 Query 216084 TTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTT 216143 | | |||| ||| | ||| | ||| | |||||||| |||||| | || |||| Sbjct 187126 TAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTT 187067 Query 216144 TCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACG 216203 |||| |||||||| ||||| || || ||| || ||| ||||||||| || Sbjct 187066 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATA 187007 Query 216204 TTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCC 216263 | ||||| | || |||||||||||||| ||||| || ||||| ||||| ||||||| Sbjct 187006 TCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCC 186947 Query 216264 CATTAGACTTGGCTGCT 216280 | ||||| | || ||| Sbjct 186946 CTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745053538364240