Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq2002 527 8e-145 seq1325 522 3e-143 seq1658 489 2e-133 >seq2002 Length=1023113 Score = 527 bits (584), Expect = 8e-145 Identities = 724/1008 (72%), Gaps = 3/1008 (0%) Strand=Plus/Plus Query 183193 GATGACTGGGTTAAACGCGATCGCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTT 183252 ||||||||| | | || || || || ||||| || |||||||| || | || ||| Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTT 167498 Query 183253 CCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGG 183312 | ||||||| | ||| | || |||||| |||| || ||| | ||||| || ||| Sbjct 167499 TCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558 Query 183313 TATACCCATGGACTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTT-ACGGCAGCTGT 183371 |||||||||||| | || ||| ||| | |||||| || |||||| || || | || Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAA-TTTCTTAACCGCGACAGT 167617 Query 183372 CTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCA 183431 || || |||||| | | | | || ||| | ||||||| |||||||| || | || Sbjct 167618 TTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACA 167677 Query 183432 AGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGG 183491 ||| |||||| || ||||| ||| | || || || |||| |||||| || || || || Sbjct 167678 AGGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGG 167737 Query 183492 TGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTAT 183551 ||| || || || || ||||| ||| | || || || || |||||||| | || | Sbjct 167738 TGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATT 167797 Query 183552 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCT 183611 || ||||| ||||| || || || |||||||| |||||||||||||| ||||||||| Sbjct 167798 GCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCT 167857 Query 183612 TATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAAT 183671 || |||||||| ||||||||| |||||||||||||||||||| || ||||||| || Sbjct 167858 AATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTAT 167917 Query 183672 CTTTAGATTCCTATTGTTCCTTCAGGGTTTCCACAACTGGACGTTAAACCCCTTCCATAT 183731 ||| ||||| | | || |||| || || || || ||||| | || || || ||||| Sbjct 167918 ATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATAT 167977 Query 183732 GATGGGAGTTGCTGGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGT 183791 |||||||||||| ||| || | || | || ||||| | ||||| ||||| | || || Sbjct 167978 GATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGT 168037 Query 183792 AGAGAATACATTGTATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCAC 183851 ||| |||| || | |||||| || || ||||| |||||| ||| ||| | | || Sbjct 168038 AGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAAC 168097 Query 183852 TCAAGAAGAAGAGACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGG 183911 |||| ||||| || ||||| ||||| || || || || || ||||| ||||| || || Sbjct 168098 CCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGG 168157 Query 183912 GGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGG 183971 ||||| ||| |||||| ||||||| || ||||||||||| ||||| || || | || Sbjct 168158 CGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 168217 Query 183972 TCTTTGGGTCTCTTCTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTT 184031 | | ||| | | || |||| | | || | ||| | || || ||||| ||||| || Sbjct 168218 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTT 168277 Query 184032 TGTAAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAA 184091 | || || ||| | ||||| |||||||| |||||||| || |||||||| || || Sbjct 168278 CATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAA 168337 Query 184092 CATACTTCTTAATGAAGGACTACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAA 184151 || || | || ||||| | ||||| ||| | || || ||||| || ||||| || Sbjct 168338 TATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 168397 Query 184152 TTTTATATTTCCAGAGGAGGTATTACCTAGAGGCAATGCTCTTTGATG 184199 ||||||| || |||||||| |||| | || || ||||||| ||| Sbjct 168398 CCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAATG 168445 >seq1325 Length=385796 Score = 522 bits (578), Expect = 3e-143 Identities = 696/960 (73%), Gaps = 9/960 (1%) Strand=Plus/Plus Query 181825 GTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACCATCT 181884 |||| ||| | || ||||||||||| ||||||||||||| | ||| | ||||| ||| Sbjct 7016 GTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACT-TCT 7074 Query 181885 GT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAACCC 181943 || || || | || ||| | || || |||| || ||||| || ||||| || |||| Sbjct 7075 GTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTT 7134 Query 181944 GTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCCTCC 182003 || | || || || | || || ||||| || || || ||||| || | || | || Sbjct 7135 GTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCT 7194 Query 182004 AACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGGCTG 182063 || || || | ||||| || ||||| |||||||| || || ||||||||||| | Sbjct 7195 GCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTA 7254 Query 182064 TATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCCT-- 182121 || ||||| ||||||| |||| ||||| | |||| | | || | || || | Sbjct 7255 TACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGG--TGTA-GCATGT 7311 Query 182122 -ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGTGTA 182180 | ||||| ||||||||||||||| || ||| | |||||||| || ||||| ||| Sbjct 7312 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTT 7371 Query 182181 GCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGTCAA 182240 ||||| || ||||| || || || || ||| ||| ||||| |||| | | |||||| Sbjct 7372 GCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAA 7431 Query 182241 GGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTGGTT 182300 || || || |||| ||||| || |||||||| | || ||||||| |||| | || Sbjct 7432 GGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTA 7491 Query 182301 TTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGTGTA 182360 ||||| |||||||||||||| ||||||||||| || | |||||| |||||||| ||||| Sbjct 7492 TTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTG 7551 Query 182361 TTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGT 182420 |||| || || || | |||||| ||||| ||||| ||||| || ||| | || | Sbjct 7552 TTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGG 7611 Query 182421 GAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACC 182480 || || || | | || || || | ||||||| ||| | ||||| ||||| || Sbjct 7612 GAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACT 7671 Query 182481 TATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTC 182540 ||||| || || || || ||||| || ||||| || |||||||| ||||| || ||| Sbjct 7672 TATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTC 7731 Query 182541 AACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTC 182600 |||||||| ||||| || | ||||||| | ||||| |||||||| || || || ||||| Sbjct 7732 AACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTT 7790 Query 182601 ACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCC 182660 || || | ||| | || ||||| |||||| | || |||||||| |||||||| || Sbjct 7791 ACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCT 7850 Query 182661 ATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGT 182720 | ||||| |||| |||||||| || | |||||||| ||| | | |||| |||| Sbjct 7851 GTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCATGCTAAC 7910 Query 182721 CTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTAGATCTTGCTGCT 182780 |||||||||||||||||||||| ||||| || || |||||||| | ||| || || ||| Sbjct 7911 TTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 489 bits (542), Expect = 2e-133 Identities = 697/975 (71%), Gaps = 22/975 (2%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 || ||||| ||| | || ||||||||||| |||||||||| || | ||| | ||||| Sbjct 187897 AACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT 187838 Query 181881 ATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGA 181939 ||||| || || | || ||| | || || |||| | ||||| || ||||| || || Sbjct 187837 -TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGA 187779 Query 181940 ACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATC 181999 ||| || | || || || | || || || || || || || ||| | || | || | Sbjct 187778 ACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTAC 187719 Query 182000 CTCCAACGCAATTG---GTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGA 182056 | ||| ||| | | ||||| || ||||| || ||||| || | ||||||| Sbjct 187718 TTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGA 187662 Query 182057 GTGGCTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTA 182116 |||| | || ||||||||||||| |||| ||||| | ||||| | | || | || Sbjct 187661 GTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--TGTA 187604 Query 182117 CGCCT---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGAT 182173 || | | ||||| ||||||||||||||| || ||| |||||||||| || ||||| Sbjct 187603 -GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGAT 187545 Query 182174 CTGTGTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTT 182233 ||| ||||| | |||| | || || || ||||||| ||||| |||| || | Sbjct 187544 TGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAAT 187485 Query 182234 CGGTCAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATAT 182293 |||||||| || | |||| ||||| || | |||||| || || ||||||| ||| Sbjct 187484 TGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTAT 187425 Query 182294 GTTGGTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGC 182353 | | || ||| | |||||||||||||| ||||||||||| || |||||||| |||||||| Sbjct 187424 GATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 187365 Query 182354 AGGTG--------TATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACA 182405 |||| ||||||| | || || | |||||| ||||| ||||| ||||| | Sbjct 187364 TGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTCCTTGGTAATT 187305 Query 182406 TCTTCACTCGTCCGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGT 182465 ||| | | | || || || || | || || || | ||||||| ||||| Sbjct 187304 TCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGG 187245 Query 182466 CAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTC 182525 ||||| ||||| || ||||| || || || || ||||| || |||| || |||||||| Sbjct 187244 CAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTT 187185 Query 182526 CAATACGCATCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTT 182585 ||||| | |||||| |||| ||||| || ||||||||| | ||||| |||||||| Sbjct 187184 CAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTA 187125 Query 182586 GTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTC 182645 || || || ||||| | || | ||| | || ||||| |||||| | || |||||| Sbjct 187124 GTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTC 187065 Query 182646 AACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTA 182705 || |||||||| || | ||||| |||| |||||||| |||| |||||||| ||| | Sbjct 187064 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATC 187005 Query 182706 TTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCA 182765 | ||||||||| ||||||||||||||||||||||| ||||| || || |||||||| Sbjct 187004 ATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCT 186945 Query 182766 CTAGATCTTGCTGCT 182780 ||||| || || ||| Sbjct 186944 CTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611672961999400