Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq1325 540 1e-148 seq2002 538 4e-148 seq1658 513 2e-140 seq1113 82.4 9e-11 seq203 82.4 9e-11 >seq1325 Length=385796 Score = 540 bits (598), Expect = 1e-148 Identities = 703/968 (73%), Gaps = 3/968 (0%) Strand=Plus/Plus Query 164784 CACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGC 164843 ||| || ||| |||||||| | || ||||| |||||| | |||||||| || | | Sbjct 7005 CACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGAC 7064 Query 164844 CGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTA 164902 || || | ||| |||||| || ||||| |||||||| | || || |||||||||| Sbjct 7065 TGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTA 7123 Query 164903 TTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCG 164962 ||||||||| ||| | || |||||| | ||||| ||||| || || || ||||| | Sbjct 7124 TTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTA 7183 Query 164963 TTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGG 165022 |||| ||||| || || || | ||||| ||||| || |||||||| || | | | Sbjct 7184 TTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTG 7243 Query 165023 ATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTG 165082 |||| ||||| |||||||| |||||||| | | |||| | |||| | | |||| Sbjct 7244 ATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTG 7303 Query 165083 TAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGA 165142 |||| || || |||||||||||||||||||| || ||| || |||||||| ||||||| Sbjct 7304 TAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGA 7363 Query 165143 TTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTT 165202 || || |||||| || || || || || ||| | | |||||| || |||| | Sbjct 7364 TTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAA 7423 Query 165203 TCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATA 165262 | |||||||| || || ||||||||||||||||| || |||||| ||||||| |||| || Sbjct 7424 TTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTA 7483 Query 165263 TGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTG 165322 || | || ||||| || || || ||||| ||||||||||| || | |||| | || || | Sbjct 7484 TGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAG 7543 Query 165323 CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCAC 165382 |||| || |||| || ||||||| |||||||||||| | || ||||| Sbjct 7544 CTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTT 7603 Query 165383 TCGTCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAG 165442 | || | || || || ||| || | || | ||||| | || | ||||| | Sbjct 7604 TGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGG 7663 Query 165443 AAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACG 165502 |||| || ||||| || || ||||| || || || ||||| || | || || ||||| | Sbjct 7664 AAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATG 7723 Query 165503 CATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTA 165562 | |||||||| || ||||| | | ||||||| | || || ||||||||||| |||| Sbjct 7724 CTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTA 7782 Query 165563 TCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCA 165622 | ||||| |||||| | ||| |||| || ||||| |||||| | || |||||||| |||| Sbjct 7783 TTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCA 7842 Query 165623 ACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACC 165682 |||| ||| | ||||||||||| | || | |||||||||||| | | |||| Sbjct 7843 ACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACC 7902 Query 165683 GTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACTTCCCCCTCGACC 165742 |||| | |||||||||||||||||||| ||||| ||||| |||||||| | |||| Sbjct 7903 ATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACC 7962 Query 165743 TCGCTGCT 165750 | || ||| Sbjct 7963 TAGCCGCT 7970 >seq2002 Length=1023113 Score = 538 bits (596), Expect = 4e-148 Identities = 718/990 (73%), Gaps = 7/990 (1%) Strand=Plus/Plus Query 166191 GATCGTTTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCT 166250 || |||||||||||||| ||||||||||| || | || ||| | ||||||| | || Sbjct 167458 GACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTTTCGTGTGCTTATTTCGCC 167516 Query 166251 ATTGGCGGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCA 166310 | || |||||| | || || || || || || || |||||||| |||||| | || Sbjct 167517 TTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCC 167576 Query 166311 AGCAGTTATCTGGAGGGT-GCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAGATG 166368 || |||| |||| ||| |||| ||||||| | ||| ||||||||||||| || || Sbjct 167577 AGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAGTTTCTACTCCTGCTAATA 167634 Query 166369 CTATGGGTCATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGA-TTTCGTCAGG 166427 | | | || ||| || | | || |||||||| || || ||||| || ||| || | Sbjct 167635 GTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTC-GT 167693 Query 166428 TGGTGCCAACTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATT 166487 ||||| ||| | || || || ||| | ||||||||||| || |||||||| || || || Sbjct 167694 TGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTATA 167753 Query 166488 GGTTTCATGCTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCA 166547 ||||| ||| | || || || || | ||||| || | || || || |||||| Sbjct 167754 GGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCA 167813 Query 166548 ATCGCTTTTTCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGT 166607 ||||| || |||||||| |||||||| || ||| ||| || || || || || || ||| Sbjct 167814 ATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCACTAGGT 167873 Query 166608 CAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTT 166667 || || ||||||| || || || ||| || | |||| || || |||||| | || Sbjct 167874 CAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTCATTCTC 167933 Query 166668 TTCCTTCAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGT 166727 || ||||||| || || || ||||||||||| ||||||||||||||||| || || ||| Sbjct 167934 TTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTTGCCGGT 167993 Query 166728 ATTCTCGGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTAT 166787 | | || | || | || | || || ||||| | ||| ||||| || | | | | | Sbjct 167994 GTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAATTTATTT 168053 Query 166788 CAAGATGGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACC 166847 |||| ||||| ||||||||| ||| ||| || || | || |||| |||||||| Sbjct 168054 GAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAAGAAACT 168113 Query 166848 TATTCAATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAAT 166907 ||||||||||| || || ||||||| |||||| || || || || |||| ||| ||| Sbjct 168114 TATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTTTCCAAT 168173 Query 166908 AAGAGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCC 166967 || | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | Sbjct 168174 AAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATGAGTGCT 168233 Query 166968 ATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTA 167027 | || | | ||| | ||| | ||||| ||||| |||||||| ||||||| ||| | Sbjct 168234 CTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAGGAAATC 168293 Query 167028 AGGGCAGCAGAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAG 167087 | ||||| || |||||||| |||||||| ||||| ||||| || |||||||| || || Sbjct 168294 CGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTAAACGAA 168353 Query 167088 GGTATGCGTTCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAA 167147 ||||| ||| |||||||||| || ||||| |||||||| | | |||||||||| Sbjct 168354 GGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAG 168413 Query 167148 GAGGTTCTTCCTAGAGGTAACGCTCTCTAA 167177 |||||||| || | || |||||||| ||| Sbjct 168414 GAGGTTCTACCCCGTGGAAACGCTCTTTAA 168443 >seq1658 Length=355568 Score = 513 bits (568), Expect = 2e-140 Identities = 709/988 (72%), Gaps = 12/988 (1%) Strand=Plus/Minus Query 164773 TGGGTGACTTCCACCAATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCC 164832 ||| | ||| ||| | |||||||||||| | || ||||| |||||| | |||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 164833 TGTTTGCTCGCCGCTACAATTTGT-TTTATTACTGCATTCATCGCTGCTCCCCCTGTGGA 164891 || | | || || | ||| ||||||| || ||||| |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 164892 CATTGATGGTATTCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTC 164951 ||||||||||||||||||||||| | || |||||| | ||||| || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 164952 TGGTGCTGTCGTTCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGC 165011 ||| | | |||| ||| | | | || | ||||| ||||| || || ||||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGC 187677 Query 165012 TGCAACCATGGATGAATGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTT 165071 || | ||||| ||||| ||||||||||||||||| | | |||| | ||||| Sbjct 187676 GGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTT 187617 Query 165072 CCTCATCGGTGTAGCTTGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTAT 165131 | | |||||||| || || |||||||||||||||||||| || ||| || ||||| Sbjct 187616 TTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTAT 187557 Query 165132 GCGTCCTTGGATTTGCGTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCT 165191 ||| ||||||||| || |||||| || | | || || ||| | || |||||| | Sbjct 187556 GCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTT 187497 Query 165192 GGTCTATCCTTTCGGTCAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTAC 165251 | |||| || | |||||||| || || | ||||||||||||||| | ||||||||||| Sbjct 187496 GATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTAC 187437 Query 165252 TTTTAACTATATGTTCGTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACAT 165311 ||| |||| |||| | || ||| | || || || ||||| ||||||||||| || ||||| Sbjct 187436 TTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACAT 187377 Query 165312 GCTCGGCGTTG--------CTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGA 165363 | | || || | |||| |||||||| | ||||||| |||||||||||| Sbjct 187376 GTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGG- 187318 Query 165364 AGTCTTGTTACTTCCTCACTCG-TCCGCGAGACAACTGAAACAGAGAGTCAGAACTACGG 165422 |||| || || || | | | | || || || |||| || | || | || Sbjct 187317 TTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGG 187258 Query 165423 TTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTCGG 165482 ||| | || || ||||| ||||| || ||||| || || ||||| || || || |||| Sbjct 187257 TTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGC 187198 Query 165483 TCGTCTCATTTTCCAATACGCATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGC 165542 || | || || ||||| | |||||| | || ||||| | ||||||||| | || Sbjct 187197 CCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGC 187138 Query 165543 AGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAA 165602 || ||||||||||| ||||| ||||| | |||| | ||| |||| || ||||| ||||| Sbjct 187137 TGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAA 187078 Query 165603 CCTGAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTAC 165662 | | || |||||||| |||||||| ||| | ||||||||||| | || ||| Sbjct 187077 CTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATAC 187018 Query 165663 TTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGC 165722 ||||||||| | | ||||||||| || |||||||||||||||||||| ||||| || Sbjct 187017 TTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGC 186958 Query 165723 TCACAACTTCCCCCTCGACCTCGCTGCT 165750 ||| |||||||| || ||||| || ||| Sbjct 186957 TCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq1113 Length=2548689 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 1073669 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 1073610 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 1073609 TACCTGACGCGTT 1073597 >seq203 Length=576092 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 161701 GTCAGTAGCTCAGCGGATAGAGCAACTGCCTTCTAAGCAGTCGGTCGTAGGTTCGATCCC 161760 ||| ||||||||| ||||||||| ||| | |||||||| |||||||||||||| ||| Sbjct 315480 GTCTGTAGCTCAGTGGATAGAGCGTCTGTTTCCTAAGCAGAAGGTCGTAGGTTCGACCCC 315539 Query 161761 TACCTGACCCGTT 161773 |||||||| |||| Sbjct 315540 TACCTGACGCGTT 315552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563639571125120