Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1325 446 2e-120 seq1658 385 6e-102 >seq1325 Length=385796 Score = 446 bits (494), Expect = 2e-120 Identities = 678/961 (71%), Gaps = 7/961 (1%) Strand=Plus/Plus Query 169703 TAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCATGTC 169762 |||| | ||| || ||| | | ||| |||| ||||| ||||| |||||||||||| Sbjct 6998 TAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCT 7057 Query 169763 TATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCG 169822 |||| | ||| | | ||||| | || ||||| || ||||| | || || || | Sbjct 7058 TATTGACTGCAACTTCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTG 7117 Query 169823 ATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTG 169882 |||| || | |||| ||| | || || | | || || ||||| || || || |||| Sbjct 7118 ATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTG 7177 Query 169883 CAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAA 169942 | || |||| |||| || || || | ||||| ||||| || ||||||||||| Sbjct 7178 CCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGT 7237 Query 169943 CTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTA 170002 | | ||||||||||| || ||||| ||||||||| || || || | | |||| | Sbjct 7238 CGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTAC 7297 Query 170003 TCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTC 170062 | || | | || |||||| | |||||||||| | |||| | |||||||| | Sbjct 7298 TTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCC 7357 Query 170063 CTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGT 170122 ||||||| ||| |||||||| ||||| || |||| || | ||| ||||| | | Sbjct 7358 CTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCT 7417 Query 170123 ATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTA 170182 | | | ||||| ||| || || || || ||||||||||| ||||| |||| || | Sbjct 7418 ACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCA 7477 Query 170183 ACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAG 170242 |||| ||| | |||||||| || ||||||||||| |||||||| ||||| | ||| || Sbjct 7478 ACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAG 7537 Query 170243 GGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCA--GCAATGCACGGTTCACTTGTAAC 170300 | || |||||| |||||| || || ||||| | || ||||| ||||| | ||||| Sbjct 7538 GTGTAGCTGGTGTGTTCGAAG--GCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAAC 7595 Query 170301 ATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGG 170360 ||| | | ||||| || || ||| | || || || || | || |||| |||| | Sbjct 7596 TTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAG 7655 Query 170361 ACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTT 170420 ||||| |||||||| || || ||||| || || ||||| || || || || | ||||| Sbjct 7656 GCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTT 7715 Query 170421 CCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCA-CTTCTTCCTTGCTACATTCCCTG 170479 ||||||||||| || ||||| |||| |||| | ||||||| | ||| | | |||| Sbjct 7716 TCAATATGCTAGTTTCAACAACTCTCGT--TCTTTACCTTCTTCTTAGCTGCTTGGCCTG 7773 Query 170480 TAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGAT 170539 ||||| | || ||||| ||| | | |||||| | || ||||| || ||| | ||||| | Sbjct 7774 TAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTT 7833 Query 170540 TTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACG 170599 | || |||||||| || | || ||| | ||| ||| ||| ||| ||||| || Sbjct 7834 TCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATA 7893 Query 170600 TTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCC 170659 | ||||| || ||| | ||||||||||| |||||||| |||||||| || ||||||| Sbjct 7894 TCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCC 7953 Query 170660 C 170660 | Sbjct 7954 C 7954 >seq1658 Length=355568 Score = 385 bits (426), Expect = 6e-102 Identities = 673/978 (69%), Gaps = 10/978 (1%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | ||| |||| ||||| ||||| ||||||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| | | || Sbjct 187855 ACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGAT 187796 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || || || || || || Sbjct 187795 ATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCG 187736 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||| | || |||| ||| | | || | ||||| ||||| || || ||||| Sbjct 187735 GGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCG 187676 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 || | ||||||||||| || ||||||||||||||| || || || | | ||||| Sbjct 187675 GCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTT 187616 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | | || |||||| | |||||||||| | |||| |||||||| Sbjct 187615 TTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATG 187556 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 || |||||||| ||| ||||||| |||| | |||| || ||||| ||||| Sbjct 187555 CGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTG 187496 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || | ||||| ||| || | || || |||||||||| ||||| ||||| Sbjct 187495 ATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACT 187436 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||| | || ||||||||||| |||||||| ||||| || ||| Sbjct 187435 TTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATG 187376 Query 170239 GCAGGGGTTGCTGGTA--------TGTTCGGAGGAGCACTCTTCTCA-GCAATGCACGGT 170289 ||| || |||||| | ||||| | | || |||| || ||||| ||| Sbjct 187375 TTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGT 187317 Query 170290 TCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGA 170349 || | |||| ||| | | || || || || ||||| || || || || | || Sbjct 187316 TCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGT 187257 Query 170350 TACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGT 170409 |||| |||||| ||||| |||||||| || || ||||| || || ||||| || || | Sbjct 187256 TACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCC 187197 Query 170410 AGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 || | ||||| |||||| |||| || ||| | |||| | | ||||||||| | ||| Sbjct 187196 CGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCT 187137 Query 170470 ACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAAC 170529 | | ||||||||| | || ||||| | | | | |||||| | || ||||| || ||| Sbjct 187136 GCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAAC 187077 Query 170530 CTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACA 170589 | ||||| || || |||||||| || | || ||| | ||| ||| || ||| Sbjct 187076 TTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACT 187017 Query 170590 TGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCA 170649 ||||| || | ||||| | || ||||| ||||||||||| |||||||| |||||||| Sbjct 187016 TGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 186957 Query 170650 CACAACTTCCCACTTGAC 170667 || |||||||| || ||| Sbjct 186956 CATAACTTCCCTCTAGAC 186939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582826048487200