Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq958 109 4e-19 seq2306 107 1e-18 seq1925 107 1e-18 seq2360 102 5e-17 seq2448 100 2e-16 seq758 91.5 1e-13 >seq958 Length=433838 Score = 109 bits (120), Expect = 4e-19 Identities = 158/219 (72%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCATCA 34829 ||| | ||||| ||| ||| ||||||||||| ||||| | |||| | || |||| Sbjct 311920 AACAAGGTGAAGAGTGGATTCCTTCTGAATGTTGTAGTCGGCTAAAG--TGCGGCCATCT 311977 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || |||||||||||||| || || || ||||| |||||| | || | || || ||||| Sbjct 311978 TCGAGCTGTTTTCCGGCGAAGATGAGACGTTGTTGGTCTGGTGGGATGCCTTCTTTGTCC 312037 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTAT 34945 ||||| |||||| || | ||||| || || || || || | |||||| Sbjct 312038 TGGATCTTGGCTTTGAC--AT--TGTCGATGGTATCCGAGGATTCGACTTCTAGGGTTAT 312093 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||| ||||| || || ||||| ||||||||||| || Sbjct 312094 GGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 312132 >seq2306 Length=232912 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| |||| || ||||| ||||| ||||| | |||| | || |||| || Sbjct 177033 ACCAAATGAAGTGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGCCCATCTTCG 177092 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || | | || |||||| | || | ||||||||||| | Sbjct 177093 AGCTGCTTTCCGGCGAAGATCAACCTCTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGA 177152 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||||| | || | || | ||| || |||| ||| ||||| || Sbjct 177153 ATCTTAGACTTGACATTGTCAATAGTATCGGAGCTCTCGACTTCGAGGGTGATGGTCTTC 177212 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| |||||||| ||||| Sbjct 177213 CCAGTGAGAGTCTTGACAAAGATTTGCAT 177241 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| | ||| |||| | || ||||||||||||||||| || Sbjct 177507 TCCTTTTGAATGTTGTAGTCAGCTAGGGTTCGGCCGTCCTCCAGCTGTTTTCCGGCGAAG 177566 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||||| | || | || |||||||| ||||| ||||| Sbjct 177567 ATCAGCCTTTGCTGGTCTGGGGGAATTCCTTCCTTGTCTTGGATCTTAGTCTTGACATTG 177626 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| |||||| |||| || ||||| ||||| || || ||||||||| Sbjct 177627 TCAATGGTGTCAGAACTCTCAACCTCGAGAGTGATGGTCTTTCCAGTAAGGGTCTTCACA 177686 Query 34971 AAGATCTGCAT 34981 ||||| ||||| Sbjct 177687 AAGATTTGCAT 177697 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| |||| |||| || ||||| |||||||| || Sbjct 177279 TCCTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCATCCTCGAGCTGCTTTCCGGCGAAG 177338 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||||| | || | ||||||||||| ||| || |||||| Sbjct 177339 ATCAGCCTTTGCTGGTCTGGGGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTGACGTTG 177398 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || || |||| ||| || || ||||| || || || || ||| Sbjct 177399 TCAATGGTGTCGGAGCTTTCCACTTCGAGGGTGATTGTCTTTCCTGTTAGGGTTTTGACA 177458 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 177459 AAGATCTGCAT 177469 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||||||||| | | |||||||||| || || || || || || || |||| Sbjct 176557 TTCCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCG 176616 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 ||| | | | |||| |||||||| || |||||||| || | | ||||||||| | | Sbjct 176617 CAAGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGG 176676 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCC 34928 | | || |||||||| ||| ||| ||||| || | ||||| | ||| | Sbjct 176677 GGATGCCTTCCTTGTCCTGAATTTTCGCCTTGAC--AT--TGTCGATGGTGTCCGAACTC 176732 Query 34929 TCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| || | ||| ||||| ||||| || | ||||| || || |||||||| Sbjct 176733 TCAACCTCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 Score = 89.7 bits (98), Expect = 3e-13 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || | |||| | || |||| || ||||| || || ||||| Sbjct 176367 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAAG 176426 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | ||||||||| | || | |||||||||||| |||||| || || || Sbjct 176427 ATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTTAC--AT 176484 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || | ||| || |||||| || | || ||||| || || || | ||||| Sbjct 176485 --TATCAATTGTATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTT 176542 Query 34967 CACAAAGATCTGCAT 34981 |||||| |||||||| Sbjct 176543 CACAAAAATCTGCAT 176557 >seq1925 Length=318408 Score = 107 bits (118), Expect = 1e-18 Identities = 142/195 (73%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | || |||| |||| |||||||| ||||| ||||| Sbjct 244891 TCCTTCTGGATATTGTAGTCAGCGAGCGTTCGGCCATCCTCCAGCTGCTTTCCAGCAAAG 244832 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| | || | |||||||| || ||||||| || || || Sbjct 244831 ATCAGACGCTGCTGGTCTGGGGGAATTCCCTCCTTATCTTGAATCTTCGTCTTAAC--AT 244774 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| |||||| |||| |||||||||||||| || |||||||| Sbjct 244773 --TGTCGATGGTGTCAGAACTCTCAACCTCGAGAGTTATGGTTTTTCCGGTAAGAGTCTT 244716 Query 34967 CACAAAGATCTGCAT 34981 || ||||| ||||| Sbjct 244715 AACGAAGATTTGCAT 244701 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| || || | |||| | || | || || ||||| ||||| ||||| Sbjct 245575 TCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAG 245516 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| || |||||| | || | || |||||||| ||| || |||||| Sbjct 245515 ATCAGTCTCTGTTGGTCTGGGGGAATGCCTTCCTTGTCTTGAATTTTGGTTTTGACATTG 245456 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||||| || | ||| ||||| || || ||||| ||||| ||| Sbjct 245455 TCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACA 245396 Query 34971 AAGATCTGCAT 34981 || |||||||| Sbjct 245395 AAAATCTGCAT 245385 >seq2360 Length=898569 Score = 102 bits (112), Expect = 5e-17 Identities = 163/232 (70%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||| ||||||| | || | ||| | ||| ||| ||||| || || || || | Sbjct 280985 CCTCCTCTCAACCGGAGCACTAGGTGCAATGTAGATTCCTTCTGGATATTGTAATCAGCC 280926 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 | | || ||||||||| ||| || || ||||| || || | ||||||||| | || Sbjct 280925 AATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAGATCAGCCTCTGCTGGTCTGGTGGG 280866 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTC 34930 | ||||| ||||| |||||| ||| | | ||| |||||| ||| | || Sbjct 280865 ATTCCCTCTTTGTCCTGAATCTT-TGTCTTAACGAT---ATCGATAGTGTCAGAGCTTTC 280810 Query 34931 AACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| ||||||||||| |||||||||||||| || ||||||||| Sbjct 280809 GACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCACGAAAATCTGCATA 280758 Score = 98.7 bits (108), Expect = 6e-16 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | | |||||| || | || || ||||||||||||||||| | | Sbjct 280757 CCTCCCCTCAAACGGAGAACCAAATGCAGAGTAGACTCCTTCTGAATGTTATAGTCTGCA 280698 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| || ||||| || || || || || || | ||||||||| | || Sbjct 280697 AGAGTCCGGCCATCCTCAAGCTGCTTCCCTGCGAAAATAAGCCTCTGCTGGTCTGGTGGG 280638 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGT-TTGACGGATGCT--ATCGATTCACCGGCCTCA 34931 | |||||| || || ||||| ||| || || || || || | || | ||| Sbjct 280637 ATCCCCTCTTTATCCTGTATCTT-TGTCTTCAC--ATTCTCAATGGTGTCGGAAGTTTCA 280581 Query 34932 ACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || | ||| || || || || || |||||||| ||||||||||||||| Sbjct 280580 ACTTCCAAGGTAATCGTCTTGCCTGTCAGAGTCTTGACAAAGATCTGCATA 280530 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||||||||| || || | | | |||| |||| |||| || || || ||||| Sbjct 281406 TTCCTTCTGAATGTTGTAATCAGCCAAGGTTCGACCATCCTCCAATTGCTTCCCTGCAAA 281347 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | || |||||| | || | ||||||||||| |||||| || || | Sbjct 281346 GATGAGCCTCTGTTGGTCTGGGGGGATACCCTCCTTGTCCTGAATCTTGGTCTTCAC--A 281289 Query 34910 TGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | || || | ||| | |||||| |||| ||| || || || || ||||| |||||| Sbjct 281288 TTCTCAATTGTATCAGAAGTCTCAACCTCGAGGGTGATAGTCTTCCCAGTGAGGGTCTTC 281229 Query 34968 ACAAAGATCTGCATA 34982 || |||||||||||| Sbjct 281228 ACGAAGATCTGCATA 281214 >seq2448 Length=870776 Score = 100 bits (110), Expect = 2e-16 Identities = 153/216 (71%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| ||| ||| ||||||||||| || || | ||| ||| | |||| ||| Sbjct 350503 ACCAAATGAAGCGTGGATTCCTTCTGAATGTTGTAATCTGCAAGTGTTCTTCCATCTTCC 350444 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 | ||||| || ||||| |||| ||||| || ||| | || | || || ||||| Sbjct 350443 AATTGTTTCCCAGCAAAGATTAAGCGTTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGG 350384 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| || | ||||| || | || ||||| | ||||||||| Sbjct 350383 ATCTTGATTTTGAC--AT--TGTCGATTGTGTCGGATGATTCGACATCTAAGGTTATGGT 350328 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| || || || || ||||| || ||||||||||| Sbjct 350327 TTTACCAGTTAGGGTTTTCACGAAAATCTGCATATT 350292 >seq758 Length=475707 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/219 (71%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCA 34829 ||| | ||||| || ||| ||||| ||||| ||||| | |||| | || | || Sbjct 367594 AACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCTAAAG--TGCGGCCGTCT 367651 Query 34830 TCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34889 || ||||| |||||||| || || || ||||| |||||| | || | || || ||||| Sbjct 367652 TCGAGCTGCTTTCCGGCGAAAATGAGGCGTTGTTGGTCTGGTGGGATTCCTTCTTTGTCT 367711 Query 34890 CTAATCTTCTGTTTGACGGATGCTATCGATTCA--CCG--GCCTCAACATCGACGGTTAT 34945 ||||| |||||| || | |||||| ||| | || || || | |||||| Sbjct 367712 TGGATCTTTGCTTTGAC--AT--TGTCGATTGTGTCCGAGGATTCTACCTCTAGGGTTAT 367767 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 |||||| ||||| || || ||||| ||||||||||| || Sbjct 367768 GGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATTTT 367806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324621679149864