Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1325 554 5e-153 seq1658 509 2e-139 >seq1325 Length=385796 Score = 554 bits (614), Expect = 5e-153 Identities = 709/973 (73%), Gaps = 3/973 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| ||||||||||||| ||| | |||| Sbjct 7954 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTAGCATGGTTAATG 7895 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| |||| | ||||| ||| ||||| || | | || ||||| || Sbjct 7894 ATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 7835 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| || |||| ||| | ||||| ||||||||| || || Sbjct 7834 AAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 7775 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||| | | ||||||| |||||||| |||||| || Sbjct 7774 ACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTTGAAACTAGCATATTGA 7716 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || ||||| || || |||||||| ||||||||||||||||| || ||||| Sbjct 7715 AAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGC 7656 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 | ||| ||||||| | || || |||||| ||| ||||| | ||| | | |||| Sbjct 7655 CTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCCCTGATCAAACTAGAA 7596 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| | |||| || |||| |||||||| || || Sbjct 7595 GTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAACACACCAGCTACACCT 7536 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 |||||| |||| ||||||||||||||||| || || |||||||| |||| ||| ||||| Sbjct 7535 AACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 7476 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || | ||||| || || ||||| |||||||| || ||||| || | | || Sbjct 7475 AAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAG 7416 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||| ||| ||||||||||| ||||| || || |||||| ||||| || Sbjct 7415 ATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGCAACATCAATCCAAGGG 7356 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | |||||| Sbjct 7355 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACATGCTACACCAAGT 7296 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||| | |||| |||| |||||| || || || |||| ||| || || | Sbjct 7295 AAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAACCACTCATCAACCGAC 7236 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 ||||||||||| || ||||| || || | || ||||| ||| | |||| | |||| Sbjct 7235 GCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGCA 7176 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| || | || | ||||| ||||| ||| Sbjct 7175 CCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAGTTCACGAATACCATCA 7116 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||| | || ||| ||| ||| || | || || ||||| ||| |||| | || Sbjct 7115 ATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAGA-AGTTGCAGTCAATAA 7057 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 ||||| ||||| | | |||||||| |||| ||| | || ||| |||||| ||| | Sbjct 7056 GGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTTTTTAGTGTTGGTTAT 6997 Query 84944 CCAATCACAGAAG 84956 | | | ||||||| Sbjct 6996 CAAGTTACAGAAG 6984 >seq1658 Length=355568 Score = 509 bits (564), Expect = 2e-139 Identities = 692/961 (72%), Gaps = 12/961 (1%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 186946 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 187005 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||||| ||| ||||| || | | || ||||| || Sbjct 187006 ATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 187065 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| | || || ||||| || |||| ||| | |||| ||||||||| || || Sbjct 187066 AAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAATAAACCAAATACCTACT 187125 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||| ||||| ||||| | ||||||| | |||||| || ||| || Sbjct 187126 ACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTTGAAACTAGTATATTGA 187185 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || |||| || || |||||||| ||||||||||||||||| || ||||| Sbjct 187186 AAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGC 187245 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | || | | |||| Sbjct 187246 CCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTCCCTAATCAAACTAGAA 187305 Query 84345 GTGACAAGTGAACCATGCATTGCAG-AGAATAGAGCTCCACCGAATACACCAG------- 84396 | || | ||||||||||| ||| |||| |||| | ||||||||||||| Sbjct 187306 ATTACCAAGGAACCATGCATAGCACTAGAA-AGAGAGCGGCCGAATACACCAGGTCACCA 187364 Query 84397 -CAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGC 84455 | || || ||||||||||| ||||||||||||||||| || || |||| ||| |||| | Sbjct 187365 GCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCTAGAATACAATC 187424 Query 84456 ATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCG 84515 || ||||||| || || ||||| | || ||||| |||||| | || ||||| || Sbjct 187425 ATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAATCTTCCTTGACCA 187484 Query 84516 AAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAG 84575 | || || | | ||| ||||||| |||||||||| |||| | || |||||| Sbjct 187485 ATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGCTAAATATGCAACAACA 187544 Query 84576 ATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAAT 84635 ||||| || |||||||| ||||| | ||||||||| ||||||||||| ||| | Sbjct 187545 ATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGACCCATATAACATGCT 187604 Query 84636 GCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCG 84695 |||||| | ||||| | |||| |||| |||||| ||||| || |||| ||| || Sbjct 187605 ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGTATAACCACTCA 187664 Query 84696 TCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGA 84755 || | || ||||| || || ||||| || || | || | | | | | | ||| Sbjct 187665 TCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTACAACTGCAAAAGTAGGA 187724 Query 84756 ACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGG 84815 | | || ||| ||||| || || |||||||| | ||||| || | || || ||||| Sbjct 187725 ATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACCCGGAAACAGGTTCACGA 187784 Query 84816 ATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGC 84874 ||||| |||||||| | | | || ||| ||| ||| || || || || ||||| ||| || Sbjct 187785 ATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAATAAATACAGA-AGTTGC 187843 Query 84875 AGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934 || | || || || ||||| | | |||||||| |||| ||| | |||||| | ||| Sbjct 187844 AGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCAGT 187903 Query 84935 G 84935 | Sbjct 187904 G 187904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571252084408040