Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2659 178 1e-39 seq558 98.7 1e-15 >seq2659 Length=772501 Score = 178 bits (196), Expect = 1e-39 Identities = 591/910 (65%), Gaps = 22/910 (2%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| || |||||||||||||| || || | | || || | Sbjct 21250 TTTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGAAGAGAGATCAA 21191 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| |||| ||||| || | || || | |||| | | || | | | Sbjct 21190 CTCCATCCAATCGAATGGGTTCTGAACTCCGTAAACCTTTTCGTACCCGAGCGCAGCCAA 21131 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 ||||| || || ||||| | ||| || |||||| ||||| ||||| || | | Sbjct 21130 CAGTCTGTCTGCAACAAACTCAATGTACTGACTCATCAGCTCACAGTTCATCCCAACCAG 21071 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 || || || || ||||| || | || ||| | || |||| ||||| || | || Sbjct 21070 CTTCACCGGAAGCGCATCAGTTACGAACTCTCGCTCGATATCGACTGCATCCTTCACTAT 21011 Query 18909 AGATACAACTCTATCTTCATT-AGGAGGGTAT--AG-AAGATGTTTAAACATCAAACATG 18964 ||| | || || | || | | || ||| ||| ||| || ||| | Sbjct 21010 CCCCTGAACCTTCTCCACACTCAGCTTCTTCTTCAGTAAGCTGT----ACAACAGACAAG 20955 Query 18965 CAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAG 19024 |||| |||||||| || || ||||||| ||||| || || || || |||||||| | Sbjct 20954 CAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAACCCG 20895 Query 19025 GCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA-AAGAATATA 19083 |||| | || | ||||| | |||||| || || ||||| ||| | | ||||| || Sbjct 20894 GCATTAACCCACGCTTTTTAAGCCAGAAGATGGA-GCAAAAACTCCCGGAGAAGAAAATC 20836 Query 19084 CCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATC 19143 ||||| || |||||||||| || || || || | | || | || |||| Sbjct 20835 CCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAAT---GATTCTGCACCATCAATC 20779 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || || ||||||||||||||||| || ||||| || || || || || | | ||| Sbjct 20778 CAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCACGAAAA 20719 Query 19204 AGAT---ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 |||| || | | | | |||||| | ||| | |||| | | | ||||||| Sbjct 20718 AGATGGGTTTTAAGGTTA---GAATCTTTGATATAAGTTTCTAAAAGAAGAGAGTACATT 20662 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || || ||||| ||||| || || || || || || || ||| | ||||| | | | Sbjct 20661 TCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAGCAACC 20602 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || || || | |||||| || | | ||| || |||||| || ||| || || Sbjct 20601 TGGACCTCTTTCATGAATCTTCCGGCGAGATTCTCGAGAACTATGCCGTCAGATGCGGCG 20542 Query 19381 AAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA---TGTATTCCAA 19437 || || || | | || | || ||||| | ||| || |||||||| || | ||| Sbjct 20541 AAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTTTCCCAG 20482 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | | || ||||| || | ||| |||||||| | ||||| || ||||| || |||||| Sbjct 20481 TGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCAGCTTTT 20422 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTT 19557 || ||||| | ||| || | | |||| || || || ||| ||||||| | ||| Sbjct 20421 TTGTACATTTCCCAGATTTGTGGGTATTCAATTGGGAACATACAGAATCTATCTGGGTTT 20362 Query 19558 TCTTTAAGAA 19567 ||| | |||| Sbjct 20361 TCTGTGAGAA 20352 >seq558 Length=1338247 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || ||||| || | ||||| ||||||| || | || | | ||| |||||||| ||| Sbjct 392552 CCCCCTTGGTCAACATATCGTGCAGTATCATTGAACACCCGCAGCATAGGGACAATGCCA 392611 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 |||||| | ||||| || || ||||||||||||| | || | || || | ||| Sbjct 392612 TTTGATGTCCCATTAGTACCGCGAATATAACTTCCAGTGGCACGAATGTTGTGCACAGAA 392671 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || || || | ||||||| || || |||||||| ||| Sbjct 392672 ACACCAATACCTCCAGCAGACTTGCTAATAACAGCACACTCCTTCAGAGTATCATAGATT 392731 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || ||||| ||| |||| || | || || || ||| Sbjct 392732 CCTTCAATGCTATCGTCTTTCATGTTGATAAGGAAGCAGCTA 392773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562087629577320