Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq1325 414 3e-111 seq1658 401 2e-107 >seq1325 Length=385796 Score = 414 bits (458), Expect = 3e-111 Identities = 672/963 (70%), Gaps = 3/963 (0%) Strand=Plus/Plus Query 25823 ACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCA 25882 ||| | ||| |||| ||| | |||||||| || || | ||||| || |||| | | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 25883 GCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCAT 25941 || ||| | ||| ||||| | |||||||| || || || | |||||||| ||||| || Sbjct 7066 GCAACTTC-TGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 25942 ACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGT 26001 ||||| | |||||||| || || | |||||||||||||| || || || || | | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 26002 CCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACACTGGA 26061 || | ||| || || || | || ||||| || || |||||||| | | | || Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 26062 CGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGT 26121 |||||| ||||||| || || || ||| |||| ||| | | |||| ||| | || || Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT 7304 Query 26122 AGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGAT 26181 |||| ||| || | |||||||||| || | | || || ||| | || ||||| Sbjct 7305 AGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGAT 7364 Query 26182 ATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTT 26241 |||||||||| |||| || | | || ||| | || ||||| | || | | Sbjct 7365 TGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAAT 7424 Query 26242 CGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTAT 26301 || ||||| || ||| |||||| |||||||| || |||||| ||||||| |||||||| Sbjct 7425 TGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTAT 7484 Query 26302 GTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGC 26361 | | |||||||| || || || || || || ||||| ||||| | ||| ||||| || Sbjct 7485 GATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGC 7544 Query 26362 TGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTCCTCACT 26421 ||| || |||| || |||||| ||||||||| || ||||| ||||| | Sbjct 7545 TGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 7604 Query 26422 TATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGTTTGGGCAAGATGA 26481 || ||||| ||| | | | || ||| | || || | || ||||||| || Sbjct 7605 GATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGA 7664 Query 26482 AGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAATTTTTCAGTATGC 26541 ||| || ||||||||||| ||||| || || || || || |||| || ||||| ||||| Sbjct 7665 AGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGC 7724 Query 26542 GAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCAT 26601 ||||| || ||| |||||| || ||||| | ||| ||||||| || || || || Sbjct 7725 TAGTTTCAACAACTCTCGTTCT-TTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTAT 7783 Query 26602 ATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAA 26661 ||| | || || | ||||| | || ||||| || ||| |||||||||| || || || Sbjct 7784 TTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAA 7843 Query 26662 CCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCG 26721 ||| || ||||| ||| | | || |||| | ||| ||||||||| | | |||| Sbjct 7844 CCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCA 7903 Query 26722 AGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTT 26781 |||||| | || | ||||||||||| || ||||||||||||||||| || | ||| | Sbjct 7904 TGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCT 7963 Query 26782 AGC 26784 ||| Sbjct 7964 AGC 7966 >seq1658 Length=355568 Score = 401 bits (444), Expect = 2e-107 Identities = 683/985 (69%), Gaps = 14/985 (1%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| |||||||| ||| | |||||||| || || | ||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | |||||||| || || || | |||| Sbjct 187855 ACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || ||||| || |||||||| || || | |||||||| ||||| || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 25990 AGG-AGCAGTCGTCCCCTCCTCTAAC-GCAATCGGACTACATTTTTACCCGATCTGGGAA 26047 || | || | ||| | || | | | | || | || ||||| || || || ||| Sbjct 187736 GGGTACCATTATTCC--TACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAA 187679 Query 26048 GCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCAC 26107 || | | || |||||| ||||||| || || || ||| |||| ||| | | ||| Sbjct 187678 GCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACAC 187619 Query 26108 TTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGA 26167 || ||| | || |||||| ||| || | |||||||||| || | | ||||| Sbjct 187618 TTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGT 187559 Query 26168 ATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTC 26227 ||| | || ||||| ||||||||||| ||| | | | || ||| || || ||| Sbjct 187558 ATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTC 187499 Query 26228 TTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGT 26287 || | || || | || ||||| || ||| |||||| |||||||| | ||||||||| Sbjct 187498 TTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGT 187439 Query 26288 ACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCAT 26347 ||||| ||||||||| | |||||| | || || || || || || ||||| ||||| || Sbjct 187438 ACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCAC 187379 Query 26348 ATGGCTGGTGTTGCTGGGG--------TTTTCGGTGGAGCTCTTTTCGCTGCTATGCACG 26399 ||| ||||| ||||| | | ||||| | |||||| ||||||||| | Sbjct 187378 ATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATG 187319 Query 26400 GAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATG 26459 | ||||| | ||| | ||| ||||| ||||| | | || ||| | | Sbjct 187318 GTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGG 187259 Query 26460 GCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTG 26519 | || | || |||||||| ||||| || ||||||||||| ||||| || || || || | Sbjct 187258 GTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCG 187199 Query 26520 GGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTG 26579 |||| || ||||| ||| | ||||| || || |||||| | || ||||| | | Sbjct 187198 CCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAG 187139 Query 26580 CTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTA 26639 || ||||||| || || || || ||| | | || | ||||| | || ||||| || | Sbjct 187138 CTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCA 187079 Query 26640 ACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTA 26699 || |||||||||| || || ||||| || ||||| ||| | | || |||| || Sbjct 187078 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 187019 Query 26700 CATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATG 26759 | ||||||||| | | ||||| |||||||| || | ||||||||||| || ||||||| Sbjct 187018 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 186959 Query 26760 CTCATAACTTTCCACTTGACTTAGC 26784 |||||||||| || || ||| |||| Sbjct 186958 CTCATAACTTCCCTCTAGACCTAGC 186934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146721150221112