Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq1325 443 6e-120 seq1658 412 1e-110 >seq1325 Length=385796 Score = 443 bits (490), Expect = 6e-120 Identities = 691/987 (70%), Gaps = 1/987 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| | |||||||| || || ||||| ||||||||||||||||| || || Sbjct 7970 AGCGGCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAA 7911 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || ||| |||||| || ||||||||||| | | || | || | |||||| || Sbjct 7910 GTTAGCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTAC 7851 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || | || || |||||||| | || | ||| || Sbjct 7850 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGT 7791 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || ||||||||||| | |||||| ||||| || || || Sbjct 7790 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTT 7732 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||||||| || ||||| | || || || || |||||||| || ||||| ||||| Sbjct 7731 GAAACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATA 7672 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| | |||| | || || | || ||||||| || ||||| Sbjct 7671 AGTTTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTC 7612 Query 36329 ACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 36388 | || | ||||| || | || ||||||||| | | || || |||| Sbjct 7611 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAA 7552 Query 36389 TACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAA 36448 || || || ||||| | ||| | || |||||||||||||| ||||| || ||||| || Sbjct 7551 CACACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAA 7492 Query 36449 GACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCC 36508 |||| |||||| |||||||| | || || || ||||||||||||||||| || || || Sbjct 7491 TACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7432 Query 36509 TTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGC 36568 ||| |||| |||||| ||||| ||| || || |||||||| || |||||||| || Sbjct 7431 TTGACCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGC 7372 Query 36569 TACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTA 36628 ||| ||||| || | |||||| || | ||||||||||||| | || |||| || Sbjct 7371 AACATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 7312 Query 36629 AGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 36688 | || | ||||| | ||||| | ||||| |||| ||| || |||||||| ||||| Sbjct 7311 ACATGCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAA 7252 Query 36689 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGA 36748 |||||| || | | || |||||||| ||||| || ||||| | || || || || Sbjct 7251 CCACTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGA 7192 Query 36749 TGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGG 36808 | || | || || || || || || |||||||| || |||| | || || ||| | Sbjct 7191 AGTAGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAG 7132 Query 36809 CTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGT 36868 |||||||||||||| ||||| || |||| ||||||| || || | | |||| | | Sbjct 7131 TTCACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAGA 7072 Query 36869 CACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTT 36928 ||| || || | | |||||||| | || |||||||| || | ||| || | ||| Sbjct 7071 AGTTGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTT 7012 Query 36929 GTTTGTACTTGTAACCCAGTCACATAA 36955 || || | || | | ||| ||| || Sbjct 7011 TTTAGTGTTGGTTATCAAGTTACAGAA 6985 >seq1658 Length=355568 Score = 412 bits (456), Expect = 1e-110 Identities = 685/988 (69%), Gaps = 10/988 (1%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 186930 AGCGGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 186989 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 || |||||||||| || ||||||||||| | || | || | |||||| || Sbjct 186990 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 187049 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || || || | || || |||||||| | || | ||| | Sbjct 187050 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAAT 187109 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 || ||| || | || ||||||||||| | |||||| |||||| || | || Sbjct 187110 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTT 187169 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 || |||| ||| || ||||| | || | || || |||||||| || ||||| ||||| Sbjct 187170 GAAACTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATA 187229 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| |||||| | || || | || ||||||| | || ||||| Sbjct 187230 AGTTTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTC 187289 Query 36329 ACGAAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 36387 | ||| || || || || |||| || ||||||||| | | || | |||| Sbjct 187290 CCTAATCAAACTAGAAATTACCAAGGAA-CCATGCATAGCACTAGAAAGAGAGCGGCCGA 187348 Query 36388 ATACCCCTG--------CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 |||| || | | ||||| | ||| || || |||||||||||||| ||||| || Sbjct 187349 ATACACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTC 187408 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 |||| || |||| |||||| |||||||| || || || | ||||||||||||||| | Sbjct 187409 AGCCTAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATA 187468 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 || || ||||| |||| ||||||| ||||| |||||| || ||||||| | || Sbjct 187469 AAATCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGC 187528 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 | |||| || ||| ||||| || | ||||||||| | ||||||||||||| | || Sbjct 187529 TAAATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACG 187588 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| ||| || | ||||| | |||||| | ||||| |||| ||| || || || Sbjct 187589 ACCCATATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 187648 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 ||| ||||||||||| || | || ||||| || ||||| || ||||| | || | Sbjct 187649 GTTGTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTAC 187708 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 | | | || | || | || || || || || ||||| || |||| | || Sbjct 187709 AACTGCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACCC 187768 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 || ||||| |||||||||||||| ||||| | |||| ||||||| || || || | Sbjct 187769 GGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAAT 187828 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919 |||| | | ||| || || | | ||||||||| | || |||||||| || | ||| Sbjct 187829 AAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATATA 187888 Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAG 36947 || ||||| | || || || | |||| Sbjct 187889 AAGACGGTTTTCAGTGCTAGTTATCCAG 187916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150449016835602