Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1325 491 1e-134 seq1658 453 3e-123 >seq1325 Length=385796 Score = 491 bits (544), Expect = 1e-134 Identities = 704/988 (71%), Gaps = 3/988 (0%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || | |||||||| |||||||| ||||| ||||| ||||||||||||| Sbjct 7970 AGCGGCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAA 7911 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| ||| |||| | || ||| |||||||| ||| | | ||| | ||||| || Sbjct 7910 GTTAGCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTAC 7851 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || | || || |||||||| || || | || || Sbjct 7850 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGT 7791 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 || ||| || | || || ||||||| ||| | |||||| ||||| ||| ||||| Sbjct 7790 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTT 7732 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||||||| || ||||| | || || || || |||||||| || ||||| ||||| Sbjct 7731 GAAACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATA 7672 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| | |||| | || || | || ||| | || ||||| Sbjct 7671 AGTTTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTC 7612 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | |||||| || | |||||||||||| | | || || |||| Sbjct 7611 CCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAA 7552 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 || ||||| ||||| | |||| | || |||||||||||||| ||||| || |||||||| Sbjct 7551 CACACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAA 7492 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCC 5730 ||| | ||||||||| ||||||| |||||| || ||||||||||||||| || ||||| Sbjct 7491 TACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCC 7432 Query 5731 CTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATG 5789 || || | |||| | || || || ||||| | || |||||||| |||||||||| Sbjct 7431 TTGACCAATTAGGTAGATCAAGAAAACAACAGTAGCC-GCTGCAACCGGAGCTGAATATG 7373 Query 5790 CTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGT 5849 | || |||||| || ||||| || | | | ||||||||||||| | || |||| | Sbjct 7372 CAACATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT 7313 Query 5850 AAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAA 5909 || ||| | ||||| | |||| | || | |||| || || ||||| ||||| | Sbjct 7312 AACATGCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATA 7253 Query 5910 GCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGG 5969 ||| ||||| | ||||||||||| || ||||| ||||| ||||| || || | Sbjct 7252 ACCACTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAG 7193 Query 5970 AGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGG 6029 | | || | || ||| || || || || |||||||| || |||||||| || | || Sbjct 7192 AAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAA 7133 Query 6030 GTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAG 6089 ||||||| || || || || || ||| | || ||||| | ||| ||||| |||||| ||| Sbjct 7132 GTTCACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAG 7073 Query 6090 TAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGT 6149 |||||| || || | | || ||||| || ||||||||||| || | ||| || | || Sbjct 7072 AAGTTGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGT 7013 Query 6150 TGTTGGTGCTAGTAACCCAGTCACAGAA 6177 | || ||| | || | | ||| |||||| Sbjct 7012 TTTTAGTGTTGGTTATCAAGTTACAGAA 6985 >seq1658 Length=355568 Score = 453 bits (502), Expect = 3e-123 Identities = 697/991 (70%), Gaps = 16/991 (2%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 186930 AGCGGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 186989 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGAC 5310 ||| |||||||| | || ||| |||||||| || | | ||| | ||||| || Sbjct 186990 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 187049 Query 5311 TGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 5370 || || ||||| || || || || | || || |||||||| || || | || | Sbjct 187050 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAAT 187109 Query 5371 AAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTT 5430 || ||| || | || || ||||||| ||| | |||||| |||||| ||| | ||| Sbjct 187110 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTT 187169 Query 5431 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 5490 || |||| ||| || ||||| | || | || || |||||||| || ||||| ||||| Sbjct 187170 GAAACTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATA 187229 Query 5491 CGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTC 5550 |||||||||||||| |||||| | || || | || ||| | | || ||||| Sbjct 187230 AGTTTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTC 187289 Query 5551 ACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | ||| | |||| | || | |||||||||||| | | || | ||||| Sbjct 187290 CCTAATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTAGAAAGAGAGCGGCCGAA 187349 Query 5611 TACCCCAG--------CAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCT 5662 ||| |||| | ||||| | |||||| || |||||||||||||| ||||| || Sbjct 187350 TACACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCA 187409 Query 5663 GCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTG 5722 |||| |||||| | ||||||||| |||||||||||||| | ||||||||||||||| Sbjct 187410 GCCTAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAA 187469 Query 5723 AAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGC 5781 || ||||| || || | ||||| | || || || | |||| || || |||| | | || Sbjct 187470 AATCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTA-GCCGCTGCAATCAGAGC 187528 Query 5782 TGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCG 5841 | ||||||| || |||||| || ||||| |||| | | ||||||||||||| | || Sbjct 187529 TAAATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACG 187588 Query 5842 TCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCC 5901 |||| ||| ||| | ||||| | ||||| | || | |||| || || || || Sbjct 187589 ACCCATATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 187648 Query 5902 ATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACC---C 5958 ||||| | ||| ||||| | || ||||| || || ||||| ||||| |||| | Sbjct 187649 GTTGTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTAC 187708 Query 5959 AATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGA 6018 || ||| | | || | || || || || || || || ||||| || |||||||| Sbjct 187709 AACTGC---AAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGA 187765 Query 6019 TCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAA 6078 || | || |||||||| || || || || || | | | || ||||| | ||| |||| Sbjct 187766 CCCGGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTAT 187825 Query 6079 TATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCAC 6138 |||||| ||| |||||| || || | | || ||||| || ||||||||||| || | Sbjct 187826 AATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 187885 Query 6139 ATAGAGGCGGTTGTTGGTGCTAGTAACCCAG 6169 ||| || ||||| | |||||||| | |||| Sbjct 187886 ATAAAGACGGTTTTCAGTGCTAGTTATCCAG 187916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152644138292718