Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1325 426 5e-115 seq1658 405 2e-108 >seq1325 Length=385796 Score = 426 bits (472), Expect = 5e-115 Identities = 685/983 (70%), Gaps = 1/983 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||||| || || ||||| ||||||||||||||||| || |||| Sbjct 7966 GCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 7907 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 ||| |||||| || ||||||||||| | | || | || | |||||| || || Sbjct 7906 GCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACAGAT 7847 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || || |||||||| | || | ||| |||| | Sbjct 7846 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTAAAC 7787 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| ||||| ||| || || || Sbjct 7786 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTTGAAA 7728 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| || ||||| | || || || || |||||||| || ||||| ||||| || Sbjct 7727 CTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAAGTT 7668 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| | |||| | || || | || ||||||| || ||||| | Sbjct 7667 TCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCCCTG 7608 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| | | || || |||| || Sbjct 7607 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAACACA 7548 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| | || |||||||||||||| ||||| || ||||| || ||| Sbjct 7547 CCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACA 7488 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | |||||| |||||||| | || || || ||||||||||||||||| || || ||||| Sbjct 7487 ATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 7428 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| |||||| ||||| ||| || || |||||||| || |||||||| || ||| Sbjct 7427 CCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGCAACA 7368 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | ||||||||||||| | || |||| ||| | Sbjct 7367 TCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAT 7308 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | ||||| |||| ||| || || ||||| || |||||| Sbjct 7307 GCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAACCAC 7248 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | | || |||||||| ||||| || ||||| | || || || ||| | Sbjct 7247 TCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTA 7188 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || || || |||||||| || |||| | || || ||| | ||| Sbjct 7187 GGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAGTTCA 7128 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| ||||| || |||| ||||||| || || | | |||| | | | Sbjct 7127 CGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAGAAGTT 7068 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | |||||||| | || |||||||| || | ||| || | ||| || Sbjct 7067 GCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTTTTTA 7008 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || | || | | ||| ||| || Sbjct 7007 GTGTTGGTTATCAAGTTACAGAA 6985 >seq1658 Length=355568 Score = 405 bits (448), Expect = 2e-108 Identities = 681/984 (69%), Gaps = 10/984 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | || Sbjct 186934 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 186993 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || ||||||||||| | || | || | |||||| || || Sbjct 186994 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 187053 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || || |||||||| | || | ||| ||| | Sbjct 187054 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAATAAAC 187113 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | |||||| |||||| ||| | || || Sbjct 187114 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTTGAAA 187173 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||| ||| || ||||| | || | || || |||||||| || ||||| ||||| || Sbjct 187174 CTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATAAGTT 187233 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| |||||| | || || | || ||||||| | || ||||| | | Sbjct 187234 TCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTCCCTA 187293 Query 25813 AT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 25871 || || || || || |||| || ||||||||| | | || | |||||||| Sbjct 187294 ATCAAACTAGAAATTACCAAGGAA-CCATGCATAGCACTAGAAAGAGAGCGGCCGAATAC 187352 Query 25872 CCCTG--------CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCC 25923 || | | ||||| | ||| || || |||||||||||||| ||||| || ||| Sbjct 187353 ACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 187412 Query 25924 TGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAA 25983 | || |||| |||||| |||||||| || || || | ||||||||||||||| | || Sbjct 187413 TAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAT 187472 Query 25984 CTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAA 26043 || ||||| |||| ||||||| ||||| |||||| || ||||||| | ||| || Sbjct 187473 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGCTAAA 187532 Query 26044 TAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 26103 || || ||| ||||| || | ||| ||||| | ||||||||||||| | || ||| Sbjct 187533 TATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGACCC 187592 Query 26104 AAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTA 26163 | ||| || | || | | |||||| | ||||| |||| ||| || |||||||| Sbjct 187593 ATATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTG 187652 Query 26164 TACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 26223 || |||||||| || | || ||||| || ||||| || ||||| | || | | Sbjct 187653 TATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTACAACT 187712 Query 26224 TTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAG 26283 | | | || | || | || || || || || ||||| || |||| | || || Sbjct 187713 GCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACCCGGAA 187772 Query 26284 ACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 ||||| |||||||||||||| ||||| | |||| ||||||| || || || | |||| Sbjct 187773 ACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAATAAAT 187832 Query 26344 GCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGG 26403 | | ||| || || | | ||||||||| | || |||||||| || | ||| || Sbjct 187833 ACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATATAAAGA 187892 Query 26404 CGGTTGTTTGTACTTGTAACCCAG 26427 ||||| | || || || | |||| Sbjct 187893 CGGTTTTCAGTGCTAGTTATCCAG 187916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151988161763988