Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2306 98.7 8e-16 seq1925 93.3 3e-14 seq2360 91.5 1e-13 seq2770 87.8 1e-12 >seq2306 Length=232912 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || | |||||| || || || ||| ||||| ||||||||||| | Sbjct 176559 CCTCCCCTCAATCGGAGCACCAAGTGAAGGGTTGACTCCTTTTGGATATTGTAATCCGCA 176618 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | | | || |||| |||||| |||||||| |||| | ||| || || | ||| Sbjct 176619 AGAGTCCTTCCATCTTCCAGCTGCTTGCCGGCAAAAATCAACCTCTGCTGGTCTGGGGGG 176678 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||| |||||||| ||| || || ||| | | | || || ||| ||| Sbjct 176679 ATGCCTTCCTTGTCCTGAATTTTCGCCTTGACATTGTCGATGGTGTCCGAACTCTCAACC 176738 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || ||||| ||||| || || || ||||||||||| Sbjct 176739 TCCAGGGTAATGGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 176785 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| |||||||||| || | || | || || | ||||||||| ||||| Sbjct 176366 CTCCTTCTGAATGTTGTAATCAGCAAGGGTACGCCCATCCTCGAGCTGCTTACCAGCAAA 176425 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| || || | ||| | ||||||||||| |||||| |||||| Sbjct 176426 GATCAACCTCTGCTGGTCTGGGGGGATCCCCTCCTTGTCCTGAATCTTAGCCTTTACATT 176485 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||||| || || || || || ||||| || || || Sbjct 176486 ATCAATTGTATCCGAGCTCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAAGGTCTTCAC 176545 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 176546 AAAAATCTGCAT 176557 >seq1925 Length=318408 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || |||| || | ||| | ||| || || ||| || ||||| |||||||||| Sbjct 245611 CCACCTCTTAAACGGAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTGTAATCAGCA 245552 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || ||||| ||||||| |||||| || | |||| Sbjct 245551 AGGGTACGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATCAGTCTCTGTTGGTCTGGGGGA 245492 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTT-ACAGAACCCACAGACTCTGACGCCTCCAC 48718 | ||| |||||||| ||| ||| ||||| ||| | | | || || || || Sbjct 245491 ATGCCTTCCTTGTCTTGAAT-TTTGGTTTTGACATTGTCAATGGTGTCGGAGCTTTCAAC 245433 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| | || || || || || || | || || |||||||||||||| Sbjct 245432 CTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTAACAAAAATCTGCAT 245385 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| ||||| || | | | | || |||| |||||||||||||| ||||| Sbjct 246031 TCCTTCTGAATGTTGTAGTCTGCCAAAGTGCGCCCGTCCTCCAACTGCTTACCAGCAAAA 245972 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| | ||| || || | |||| || |||||||| ||||| || ||| | Sbjct 245971 ATCAACCTCTGCTGGTCAGGAGGAATTCCTTCCTTGTCCTGTATCTTAGTCTTGACATTA 245912 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || ||||| ||| ||||||| || || ||||| || ||||| || || ||| Sbjct 245911 TCGATAGTGTCTGAGCTCTCGACCTCCAAGGTGATGGTTTTCCCAGTCAAGGTCTTAACA 245852 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 245851 AATATTTGCAT 245841 >seq2360 Length=898569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | || || || || ||| ||| ||||| || ||||| || | | Sbjct 280529 CCACCCCTCAGACGGAGGACTAAGTGGAGTGTGGACTCCTTTTGGATGTTGTAGTCGGCT 280470 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| ||| | || |||||||||||||| || || || || | ||| || |||| || Sbjct 280469 AGAGTTCTGCCATCATCCAACTGCTTACCAGCGAAGATGAGCCTCTGCTGGTCCGGTGGT 280410 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGT-TTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||| || ||| ||| || || ||| | | || || || | ||| || Sbjct 280409 ATACCCTCCTTATCTTGAAT-TTTGGTCTTGACATTCTCAATAGTGTCAGATGTCTCGAC 280351 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 ||| | || || || || || |||| ||||| ||||| || |||||| Sbjct 280350 CTCGAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACAAAGATTTGCATC 280302 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || ||||||||||||| | | || | || ||||||||||| || ||||| Sbjct 280949 TCCTTCTGGATATTGTAATCAGCCAATGTCCGGCCATCATCCAACTGCTTCCCTGCAAAG 280890 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA- 48694 ||||| | ||| || || | || | ||||| ||||| |||| ||||| ||| || Sbjct 280889 ATCAGCCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCCTGAATC-TTTGTCTTAACGAT 280831 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || || || || |||| || || |||||||| || | ||| || || Sbjct 280830 ATCGATAGTGTCAGAGCTTTCGACTTCCAGGGTGATGGTTTTTCCAGTGAGAGTCTTCAC 280771 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 280770 GAAAATCTGCAT 280759 >seq2770 Length=737149 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/193 (70%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| ||| | || | || || | |||||| || | ||| Sbjct 636314 CTCCTTCTGGATATTGTAATCAGCAAGAGTACGTCCATCCTCGAGCTGCTTCCCAGTAAA 636373 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| ||||||||||| ||| | ||||| ||| | |||||| || ||| Sbjct 636374 GATCAACTTCTGTTGATCCGGGGGGATTCCCTCTTTGCCCTGAATCTTGGTCTTAACATT 636433 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGT-AATCGTTTTTCCCGTCAAAGTTTTTA 48753 | |||| || || || ||||||| || ||| ||||| || |||||||| |||| Sbjct 636434 GTCGACAGTGTCAGAGCTTTCAACCTCCAAGGTAAATTGTTTTCCCTGTCAAAGTCTTTA 636493 Query 48754 CAAAAATCTGCAT 48766 |||| || ||||| Sbjct 636494 CAAATATTTGCAT 636506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380923611614199