Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1325 499 3e-136 seq1658 461 8e-125 >seq1325 Length=385796 Score = 499 bits (552), Expect = 3e-136 Identities = 687/957 (72%), Gaps = 13/957 (1%) Strand=Plus/Plus Query 162535 TATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTC 162594 ||| | || ||||| ||||| ||||||||||| ||| | | ||| | || || Sbjct 7021 TATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACTTCTGTATTT 7080 Query 162595 ATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCA 162654 || | || |||||||| || |||| ||| ||||| |||||||| | |||| |||| | Sbjct 7081 ATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCC 7140 Query 162655 GGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCT 162714 || || || || || || ||||| || || || ||||| | |||||| ||| ||| Sbjct 7141 GGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCT 7200 Query 162715 ATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAAT 162774 || || | ||||| ||||| || ||||||||||| | ||||||||||||| || || Sbjct 7201 ATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAAC 7260 Query 162775 GGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT--- 162831 || || |||| |||| | || | |||| | | || | ||||| | | Sbjct 7261 GGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT---AGCATGTTATATG 7317 Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | |||||||| |||||||| ||||||||| Sbjct 7318 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATAT 7377 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || | ||| |||||| |||| | | |||||||| Sbjct 7378 TCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGC 7437 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || || ||| ||||||| |||| ||| | || ||||| Sbjct 7438 TTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAG 7497 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || |||||||||||||| ||||| || || | ||| | || || || ||||| |||| Sbjct 7498 GCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAA 7557 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 || || || | |||||||||||| ||||| | || |||||| | | ||||| ||||| Sbjct 7558 GGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 7617 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAAC 163191 || | | || || || | ||||| | ||| | ||||| ||||| ||||| || Sbjct 7618 ACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAAT 7677 Query 163192 ATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAAC 163251 ||||| ||||||||||| || || || || |||||||| || ||||| |||||||||| Sbjct 7678 ATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAAC 7737 Query 163252 TCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCA 163311 || ||||| || ||||||| | ||||| | ||||| || | || ||||| ||||| Sbjct 7738 TCTCGTTC-TTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCT 7796 Query 163312 ATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTT 163371 | ||| | |||||||| |||||| | || |||||||| ||||||||||| || ||| Sbjct 7797 TTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 7856 Query 163372 GA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT 163428 || |||| || || |||| ||||||||| |||||| ||||| || || Sbjct 7857 GATAGTCAAGGTCGT---GTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTTT 7913 Query 163429 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||||||||||||| || ||||||||||| |||||||| | ||||| || ||| Sbjct 7914 GGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 461 bits (510), Expect = 8e-125 Identities = 690/978 (71%), Gaps = 20/978 (2%) Strand=Plus/Minus Query 162522 TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGC 162581 ||| || || | ||| | || ||||| ||||| |||||||||||| ||| | | || Sbjct 187901 TGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGC 187842 Query 162582 AGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAG 162641 | | || || || || || |||||||| || |||| | | ||||| |||||||| | Sbjct 187841 AACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCG 187782 Query 162642 AGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCC 162701 ||||||||| | || || || || || || || || || || || ||| | | |||| Sbjct 187781 TGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCC 187722 Query 162702 TAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGA 162761 || || | | | || | ||||| ||||| || || ||||| || ||||||| Sbjct 187721 TACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGA 187662 Query 162762 GTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCAC 162821 |||||| || || ||||| |||| |||| | || | ||||| | | || | Sbjct 187661 GTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT--- 187605 Query 162822 AGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGAT 162878 ||||| | | |||||| ||||||||||| || ||| |||||||||| |||||||| Sbjct 187604 AGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGAT 187545 Query 162879 CTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTT 162938 ||||||||| | || | | | || || ||||| |||||| |||| || | Sbjct 187544 TGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAAT 187485 Query 162939 CGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACAT 162998 |||||||| || | ||| | |||||||| | || ||||||||||| |||| || Sbjct 187484 TGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTAT 187425 Query 162999 GTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGC 163058 | | || ||| | || |||||||||||||| ||||| || || || ||| | || || || Sbjct 187424 GATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 187365 Query 163059 AGGTG--------TATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACT 163110 |||| ||||||| | || || | |||||||||||| ||||| | || | | Sbjct 187364 TGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTCCTTGGTAATT 187305 Query 163111 TCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGA 163170 ||| | | || || ||||| || || | || || || | ||||| | ||||| Sbjct 187304 TCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGG 187245 Query 163171 CAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTC 163230 ||||| ||||| ||||| || ||||| ||||||||||| || || | || |||||||| Sbjct 187244 CAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTT 187185 Query 163231 CAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTG 163290 || ||| | ||||||| |||| ||||| | ||||||||| | ||||| | ||||| Sbjct 187184 CAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTA 187125 Query 163291 GTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTC 163350 || | || ||||| | ||| | ||| | |||||||| |||||| | || |||||| Sbjct 187124 GTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTC 187065 Query 163351 AACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGAT 163407 || ||||||||||| || ||||| |||| || || ||| ||||||||| ||| Sbjct 187064 AATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGT---GTAATTAATACTTGGGCTGAT 187008 Query 163408 ATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTC 163467 ||| ||||| | || |||||||||||||||||||| || ||||||||||| |||||| Sbjct 187007 ATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 186948 Query 163468 CCACTTGACCTTGCTGCT 163485 || || ||||| || ||| Sbjct 186947 CCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553063969443720