Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq2002 489 2e-133 seq1325 435 3e-117 seq1658 399 2e-106 seq936 89.7 6e-13 >seq2002 Length=1023113 Score = 489 bits (542), Expect = 2e-133 Identities = 715/1007 (71%), Gaps = 3/1007 (0%) Strand=Plus/Plus Query 164619 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTT 164678 ||||||||| | | || || || |||||||| || |||||||| || | || ||| Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCT-CTT 167498 Query 164679 CCCACTGCTTATCTGGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGG 164738 | ||||||| | ||| | || |||||| |||| || ||| | ||||| || ||| Sbjct 167499 TCGTGTGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558 Query 164739 TACACCCATGGTCTTGCTTCTTCCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTC 164798 || |||||||| | || ||| ||| | |||||| || || | || || | || Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAGTT 167618 Query 164799 TCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 164858 || || |||||| || | | | || ||| | | |||| |||||||| || | || Sbjct 167619 TCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAA 167678 Query 164859 GG-GAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGG 164917 || || ||| | || ||||| ||| | || || || |||| ||| || ||||| || || Sbjct 167679 GGAGACTTTACT-CGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGG 167737 Query 164918 TGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTAT 164977 ||| ||||| || || ||||| ||| | || || || ||||| || || | || | Sbjct 167738 TGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATT 167797 Query 164978 CCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 165037 || ||||| ||||| || || || |||||||| |||||||||||||| || ||||| Sbjct 167798 GCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCT 167857 Query 165038 TATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAAT 165097 || || ||||| |||||||| ||||||| || || || ||||| | ||||| || Sbjct 167858 AATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTAT 167917 Query 165098 CTTTAGATTCCTGTTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATAT 165157 ||| ||||| | | || ||||||| || || || ||||| || || || || ||||| Sbjct 167918 ATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATAT 167977 Query 165158 GATGGGTGTTGCAGGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGT 165217 |||||| ||||| ||| | ||||| | || | |||| ||||||||||| | || || Sbjct 167978 GATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGT 168037 Query 165218 TGAAAATACATTATACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGAC 165277 ||||||| |||| || || || || ||||||||| || ||| ||| | | || Sbjct 168038 AGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAAC 168097 Query 165278 ACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGG 165337 || | ||||| |||||||| |||||||| || |||||||| ||||| || || || || Sbjct 168098 CCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGG 168157 Query 165338 CATTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGG 165397 | |||| ||||| || || | ||| | ||||| || ||||| ||||| || || | || Sbjct 168158 CGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGG 168217 Query 165398 TCTTTGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTT 165457 | | |||| || |||| | | ||| | ||| | ||||| ||||| || || || Sbjct 168218 TTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTT 168277 Query 165458 CGTGAGTCAGGAGATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAA 165517 | | ||||| ||| | ||||| |||||||| |||||||| || |||||||||||||| Sbjct 168278 CATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAA 168337 Query 165518 CATCCTATTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAA 165577 || || || || ||||| | ||||||||| |||| || ||||| || |||||||| Sbjct 168338 TATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAA 168397 Query 165578 CTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGCAACGCCCTTTAAT 165624 | |||| ||||| || || || | || | || ||||| ||||||| Sbjct 168398 CCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAAT 168444 >seq1325 Length=385796 Score = 435 bits (482), Expect = 3e-117 Identities = 686/972 (71%), Gaps = 13/972 (1%) Strand=Plus/Plus Query 162913 ACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCA 162972 || || ||| | || ||| | || ||||| || || ||||||| ||||| | ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACT 7065 Query 162973 GCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCAT 163031 |||||| ||||| || || | |||||| | |||||||| | || || ||||| || || Sbjct 7066 GCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTAT 7124 Query 163032 CCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGT 163091 ||||| | || | || || || | || || ||||| || || || ||||| || | Sbjct 7125 TCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTAT 7184 Query 163092 TCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGA 163151 ||| |||| || || || | ||||| ||||| || |||||||| || || |||| Sbjct 7185 TCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGA 7244 Query 163152 TGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCAT 163211 ||||||| | || ||||| ||||||| |||| | || | |||| | | || | Sbjct 7245 TGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGG--T 7302 Query 163212 CTATGCAT---ATATGGGACGTGAATGGGAACTTTCATATCGCTTAGGTATGCGCCCCTG 163268 || |||| ||||||| ||||| ||||||||| | || | ||||||||||| || Sbjct 7303 GTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTG 7361 Query 163269 GATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCC 163328 ||| ||| ||||| || || || |||||||| || | | || ||| || |||| | Sbjct 7362 GATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCT 7421 Query 163329 TTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGCACATTCAACTA 163388 | |||||||| || ||||| | ||||| || || |||||| | || ||||||| Sbjct 7422 AATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTT 7481 Query 163389 CATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGTTGGGAGT 163448 ||| |||| ||||| || |||||||||||||| ||||| || || | ||||| || || Sbjct 7482 TATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGT 7541 Query 163449 CGCTGGTGTCTTCGGTGGATCACTCTTCTCG-GCAATGCATGGCAGTCTTGTTACCTCTT 163507 |||||||| |||| || || || || | | || |||||||| | || || ||| Sbjct 7542 AGCTGGTGTGTTCGAAGGCTCTCT-TTATAGTGCTATGCATGGTTCCTTGGTAACTTCTA 7600 Query 163508 CACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAACTATGGTTACAAGTTTGGTCAAG 163567 | || | || || || ||| ||| || || | ||||||| || | |||| Sbjct 7601 GTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAG 7660 Query 163568 AAGAAGAGACATACAACATCGTTGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAAT 163627 | ||||| || || || || || || || ||||| || ||||| || |||||||| |||| Sbjct 7661 AGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAAT 7720 Query 163628 ATGCATCATTCAACAACAGCAGAAGTCTTCA-CTTCTTCCTGGCAGCATGGCCTGTCGTC 163686 |||| ||||||||| | |||| | ||||||| | || || |||||||| || Sbjct 7721 ATGCTAGTTTCAACAACTCTCG--TTCTTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTA 7778 Query 163687 GGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAAC 163746 || || ||||||||||| | || | || || ||||| |||||| | || |||||||| Sbjct 7779 GGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAAT 7838 Query 163747 TTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTGCTT 163806 |||||||| || | ||||| |||| |||||||| | | |||||||| || | || Sbjct 7839 TTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATT 7898 Query 163807 AACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTC 163866 |||| ||| | |||||||||||||||||||| ||||| || || |||||||| | Sbjct 7899 AACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAA 7958 Query 163867 GATCTTGCTGCT 163878 || || || ||| Sbjct 7959 GACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 399 bits (442), Expect = 2e-106 Identities = 690/994 (69%), Gaps = 24/994 (2%) Strand=Plus/Minus Query 162901 TGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTGATGATTCCA 162960 ||| ||||| || | ||||| || ||| | || ||||| || || ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 162961 ACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGA 163019 || | ||| | |||||| ||||| || || | |||||| | |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 163020 CATTGACGGCATCCGTGAGCCCGTCGCTGGTTCACTCATGTATGGCAACAACATCATCTC 163079 ||||| || || ||||| || || | || || || | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 163080 TGGTGCAGTTGTTCCATCTTCCAACGCAATTG---GTCTTCACTTCTATCCCATCTGGGA 163136 ||| | || |||| ||| ||| ||| | | ||||| ||||| || || || Sbjct 187736 GGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGA 187680 Query 163137 AGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCA 163196 ||| || | ||||||||||| | || ||||||||||||| |||| | || | || Sbjct 187679 AGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACA 187620 Query 163197 CTTCCTTATCGGCATCTATGCAT---ATATGGGACGTGAATGGGAACTTTCATATCGCTT 163253 ||| | | || | || |||| ||||||| ||||| ||||||||| | || | Sbjct 187619 CTTTTTACTTGG--TGTA-GCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCT 187563 Query 163254 AGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGT 163313 |||||||||||| ||||| ||| ||||| | || | ||||||| || | || || Sbjct 187562 AGGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGT 187503 Query 163314 CTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTC 163373 ||| || |||| || | |||||||| || | ||| | ||||| || | ||||| Sbjct 187502 TTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTC 187443 Query 163374 TGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTT 163433 ||| || ||||||| ||| |||| ||| | || |||||||||||||| ||||| || || Sbjct 187442 TGGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATT 187383 Query 163434 CCATATGTTGGGAGTCG--------CTGGTGTCTTCGGTGGATCACTCTTCTCG-GCAAT 163484 || ||||| || || | ||||||| ||||| | || || |||| | || || Sbjct 187382 TCACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTAT 187324 Query 163485 GCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACTGAGTCACAAAA 163544 |||||| | || | ||| | | | || || || |||| ||| || || Sbjct 187323 GCATGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAA 187264 Query 163545 CTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCAGCACATGGCTA 163604 | ||||||| || || ||||| ||||| || || || || || || || ||||| || Sbjct 187263 TGAGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTA 187204 Query 163605 CTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACAGCAGAAGTCTTCACTTCTT 163664 |||| || |||||||| |||||| | |||||| || | | | |||||||| Sbjct 187203 TTTCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTT 187144 Query 163665 CCTGGCAGCATGGCCTGTCGTCGGAATCTGGTTTACTGCACTGGGCGTAAGCACCATGGC 163724 | | || || |||||||| || || || ||||||| ||| | || | || || ||||| Sbjct 187143 CTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGC 187084 Query 163725 ATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGCT 163784 |||||| | || |||||||| |||||||| || | ||||| |||| |||||||| | Sbjct 187083 CTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT 187024 Query 163785 CAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCG 163844 || |||||||| || | ||||||| ||| || |||||||||||||||||||| || Sbjct 187023 TAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACG 186964 Query 163845 TAACGCACACAACTTCCCACTCGATCTTGCTGCT 163878 ||| || || |||||||| || || || || ||| Sbjct 186963 TAATGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq936 Length=443095 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 164072 GACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGTGCTTGCTCC 164131 || || || ||||| | ||| ||||| | |||||| ||| | ||||| | |||||| Sbjct 203482 GATGCTGCTGAAGAGGTAGGGATTGATTTGCCTTACTCGTGTAGGGCTGGCTCGTGCTCC 203541 Query 164132 TCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCATTCCTAGAC 164191 ||||| || |||| || ||||| ||| | || ||| |||||| || ||| |||| Sbjct 203542 TCATGCGCCGGTATGCTTAAGTCTGGTACTCTCGACCAGTCTGATCAATCCTTCTTAGAT 203601 Query 164192 GATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTG 164228 ||||| ||||| || || |||| || ||||| |||| Sbjct 203602 GATGACCAGATAGCTGCTGGATGGGTTCTTACTTGTG 203638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563188388118440