Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2659 107 4e-18 >seq2659 Length=772501 Score = 107 bits (118), Expect = 4e-18 Identities = 366/563 (65%), Gaps = 18/563 (3%) Strand=Plus/Minus Query 48131 CAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGA 48190 || |||||||| | || | |||||||| || || ||| |||| |||||| | | Sbjct 20958 CAAGCAAAGTCACAATGAAGCCCTTCGTCTCGCGATATCAGCTCGTTCGAGAAGGTTAAA 20899 Query 48191 CCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAG 48250 || ||||| | ||| | || ||| |||||||| || | ||| || |||||||| Sbjct 20898 CCCGGCATTAACCCACGCTTTTTAAGCCAGAAGATGGAGCAAAAACTCCCGGAGAAGAAA 20839 Query 48251 ATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC--TG 48308 || || || || || || || | | |||||| | || || |||| | | Sbjct 20838 ATCCCTTCAACACAAGCAAAAGCAATTAACCTCTCAGCAAATGA----TTCTGCACCATC 20783 Query 48309 AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCC 48368 | ||||| ||| ||||| || ||||||||||| | || || || || || || || | Sbjct 20782 A-ATCCAACGAAGAGCCCAATCAGCCTTCTTCTTAACACAAGGGATAGTTTCAATTGCAC 20724 Query 48369 GGAAGAGCT---TCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGT 48425 | || || | | || | | | || | ||| || | || | || Sbjct 20723 GAAAAAGATGGGTTTTAAGGTTA---GAATCTTTGATATAAGTTTCTAAAAGAAGAGAGT 20667 Query 48426 ACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAA 48485 |||| |||||||| | || || || ||||| ||||| || ||||| || | || ||| Sbjct 20666 ACATTTCAGAGTGAATGTTTTCAATGGCGATTTGGAAGCCATAGAAAGCGCGAGCTTCAG 20607 Query 48486 ACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAA 48544 ||||| || ||| | |||||| ||| || |||||||| ||||| || || || Sbjct 20606 CAACCTGGACCTCTTTCATGAATCT-TCCGGCGAGATTCTCGAGAACTATGCCGTCAGAT 20548 Query 48545 GCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGT---GAGAGCA 48601 || || ||||||||||||| || | | |||||| | |||| | ||| || | Sbjct 20547 GCGGCGAAGAAGGCAAGGATGTGGGTGATGAAATGCTGTTCGTCGGAGGTTAAGACGGTT 20488 Query 48602 TTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGT 48661 | |||| | || |||| || || |||||||| |||||||||| || || Sbjct 20487 TCCCAGTGACGAACATCTTGTGAAAGATCGACTTCTTCGGCAGTCCAGAACGAAGCTTCA 20428 Query 48662 GCTTTTTTGTACATGCCCCATAT 48684 |||||||||||||| |||| || Sbjct 20427 GCTTTTTTGTACATTTCCCAGAT 20405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931497716145920