Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq1325 511 5e-140 seq2002 504 7e-138 seq1658 484 7e-132 seq1113 84.2 2e-11 >seq1325 Length=385796 Score = 511 bits (566), Expect = 5e-140 Identities = 687/952 (72%), Gaps = 3/952 (0%) Strand=Plus/Plus Query 8284 TATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCC-GCTACAATTTGCTT 8342 ||| | || |||||||| ||| | |||||||||||| || ||| | || || | || Sbjct 7021 TATATTGGATGGTTTGGTGTTTTGATGATCCCAACC-TTATTGACTGCAACTTCTGTATT 7079 Query 8343 CATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGC 8402 ||| || ||| |||||||||||| || || || || || || || |||| ||| | Sbjct 7080 TATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTC 7139 Query 8403 TGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGC 8462 || ||||| | ||||| ||||| || || || ||||| || |||| | ||| || Sbjct 7140 CGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGC 7199 Query 8463 AATTGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAA 8522 || || | ||||| || || || |||||||| || || ||||||||||| | ||||| Sbjct 7200 TATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAA 7259 Query 8523 CGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGG 8582 ||| |||||||| | || | ||| | |||| | ||||| || ||||||||| Sbjct 7260 CGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGTAGCATGTTATATGGG 7319 Query 8583 TCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTC 8642 |||||| ||||||||| || ||| || || ||||| |||||||| ||||||||| || Sbjct 7320 TCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTC 7379 Query 8643 TGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTT 8702 ||||| ||||| || ||| ||| ||| ||| | |||| | |||||||||| || Sbjct 7380 AGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTT 7439 Query 8703 CTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGC 8762 ||||||||||||||||| || ||||| |||| ||||||| |||| |||| |||||||| Sbjct 7440 TTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGC 7499 Query 8763 TGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGG 8822 ||||||||||||||| ||||| || || | |||| | ||||| |||||||| |||| || Sbjct 7500 TGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGG 7559 Query 8823 ATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCAC 8882 ||||| | | || ||||||||||| | || |||||| || | | || ||||| Sbjct 7560 CTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCAC 7619 Query 8883 CGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACAT 8942 ||| || ||| || | || |||| ||| | ||||| || |||||||| || || Sbjct 7620 ATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATAT 7679 Query 8943 TGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTC 9002 ||| || |||||||| || || || || |||||||| |||||||| ||| ||||| || Sbjct 7680 TGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTC 7739 Query 9003 TAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGCCCT 9062 | | ||| |||||| | ||||| |||||||| || || || |||||||| || | Sbjct 7740 TCG-TTCTTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTT 7798 Query 9063 CGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAGTCCATTATCGA 9122 || | || ||||| |||||| | ||||| ||||| |||||||| || | | || Sbjct 7799 AGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA 7858 Query 9123 CGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCAGGACTCGGTAT 9182 | ||||| || || | | || ||||| || | |||||| || | ||||| Sbjct 7859 TAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTTTGGTAT 7918 Query 9183 GGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCGGCT 9234 |||||| ||||| ||| | || || || |||||||| | ||||| || ||| Sbjct 7919 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq2002 Length=1023113 Score = 504 bits (558), Expect = 7e-138 Identities = 704/986 (71%), Gaps = 1/986 (0%) Strand=Plus/Plus Query 9827 GATGACTGGCTTAAACGAGATCGCTTTGTTTTTGTGGGTTGGTCTGGACTACTTCTTTTT 9886 ||||||||| | | || || || |||||||| ||||||||||| ||| | || ||| Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTT 167499 Query 9887 CCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGTTTGTCACGAGTTGG 9946 | ||||||| | || | || || ||| |||| || || || ||||| || ||| Sbjct 167500 CGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558 Query 9947 TACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCCTTACAGCGGCTGTC 10006 || || || ||| | || ||| ||| | || ||| |||||| | || ||| | || Sbjct 167559 TATACCCATGGATTGGCCAGTTCTTATTTGGAAGGTTGCAATTTCTTAACCGCGACAGTT 167618 Query 10007 TCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAG 10066 || || |||||| || | | | || ||| | | |||| |||||||| || | || Sbjct 167619 TCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAA 167678 Query 10067 GGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGA 10126 ||||| || || ||| || | || || || ||| ||||||| || || || || Sbjct 167679 GGAGACTTTACTCGTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGT 167738 Query 10127 GCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGAGATTAATTGGAATC 10186 || ||||| | || || ||||||||||| || || ||||| || ||| || | | Sbjct 167739 GCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCAATTG 167798 Query 10187 CGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTC 10246 || ||||| ||||| ||||| || ||||| || |||||||||||||| ||| ||||| Sbjct 167799 CGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTA 167858 Query 10247 ATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATT 10306 || |||||||| || |||||| ||||||||||||| || ||||| || | || || || Sbjct 167859 ATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATA 167918 Query 10307 TTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATG 10366 || || ||| ||||||| | || || |||||||||||||| || ||||| || |||||| Sbjct 167919 TTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATG 167978 Query 10367 ATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTA 10426 ||||||||||| ||| || |||| | || || |||| || || || || | || ||| Sbjct 167979 ATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTA 168038 Query 10427 GAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACT 10486 ||||| | | | | |||| || || ||||| || ||| |||||| | || Sbjct 168039 GAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACC 168098 Query 10487 CAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGA 10546 |||| ||||| || ||||| ||||| || |||||||| || |||||||| || ||||| Sbjct 168099 CAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGC 168158 Query 10547 ATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCTGTTATGGGT 10606 |||||||| ||||||| | ||| | |||||||||||| | |||||||| || | ||| Sbjct 168159 GTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGT 168218 Query 10607 CTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTT 10666 | |||| | || ||||| | | ||| | ||| | || || ||||| || || || Sbjct 168219 TTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTC 168278 Query 10667 GTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCTATACGAAGAAT 10726 | || || || ||| | || | ||||||||||||||||| || ||||| || || ||| Sbjct 168279 ATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAAT 168338 Query 10727 ATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACCAACCACACGAAAGC 10786 || || | ||||||||| ||||||| |||||||| | || || || || |||| | Sbjct 168339 ATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAAC 168398 Query 10787 TTTGTTTTCCCAGAAGAAGTTCTTCC 10812 || | ||||| || || ||||| || Sbjct 168399 CTTATATTCCCTGAGGAGGTTCTACC 168424 >seq1658 Length=355568 Score = 484 bits (536), Expect = 7e-132 Identities = 687/963 (71%), Gaps = 16/963 (2%) Strand=Plus/Minus Query 8284 TATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTGCC-GCTACAATTTGCTT 8342 ||| | || |||||||| ||| | |||||||| ||| || ||| | || || | || Sbjct 187888 TATATTGGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACTGCAACTTCTGTATT 187830 Query 8343 CATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGC 8402 |||| || ||| |||||||||||| | || || || || || || ||||| ||| | Sbjct 187829 TATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGTATTCGTGAACCTGTTTC 187770 Query 8403 TGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGC 8462 || ||||| | ||||| || || || || || ||| | || |||| | | | || Sbjct 187769 CGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATTATTCCTACTTTT---GC 187713 Query 8463 AATTG---GCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTA 8519 | ||| | | ||||| || || || || ||||| || | ||||||||||| | || Sbjct 187712 AGTTGTAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGTTGGTTGATGAGTGGTTATA 187653 Query 8520 CAACGGTGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATAT 8579 ||||||||||||||| | || | ||| | ||||| | ||||| || |||||| Sbjct 187652 CAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCATGTTATAT 187593 Query 8580 GGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATA 8639 ||||||||| ||||||||| || ||| || || ||||| |||||||| ||||||||| Sbjct 187592 GGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATA 187533 Query 8640 CTCTGCTCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTC 8699 | |||| |||| || ||| ||||||| ||| | |||| || |||||||||| Sbjct 187532 TTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAG 187473 Query 8700 GTTCTCTGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCA 8759 || | ||||||||||||||| | ||||| ||||| ||||||| |||| |||| ||| | Sbjct 187472 ATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCAACTTTATGATTGTATTCTA 187413 Query 8760 GGCTGAGCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTG--------CTGGT 8811 |||||||||||||||||| ||||| || || |||||| | ||||| | ||||| Sbjct 187412 GGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGACCTGGT 187353 Query 8812 GTCTTCGGCGGATCTCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTT 8871 || |||||| | ||||| | | || ||||||||||| | || | |||| || || Sbjct 187352 GTATTCGGCCGCTCTCTTTCTAGTGCTATGCATGGTTCCTTGGTAATTTCTAGTTTGATT 187293 Query 8872 CGTGAGACCACCGAAACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAA 8931 | || ||||| |||| || ||| || | || |||| ||||| ||||| || ||| Sbjct 187292 AGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACAGATTCGGGCAAGAGGAAGAA 187233 Query 8932 ACTTACAACATTGTTGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCT 8991 ||||| || ||||| || |||||||| || || | || |||||||| |||||| | | Sbjct 187232 ACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGATTGATCTTTCAATATACTAGT 187173 Query 8992 TTTAACAATTCTAGAAGCTTGCATTTCTTCCTCGCTGCGTGGCCTGTGGTGGGAATCTGG 9051 || ||| | ||| | || || |||||| | ||||| |||||||| || || || ||| Sbjct 187172 TTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGG 187113 Query 9052 TTTACCGCCCTCGGCGTCTCGACCATGGCTTTCAACCTCAATGGCTTCAACTTCAACCAG 9111 |||| || | || | || ||||| |||||| | ||||| ||||| |||||||| Sbjct 187112 TTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAA 187053 Query 9112 TCCATTATCGACGGACAAGGACGAGTGCTCAACACCTGGGCAGACGTACTTAACCGCGCA 9171 || | | || | ||||| || || | || || ||||| || | ||||||| || Sbjct 187052 TCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGGCTGATATCATTAACCGTGCT 186993 Query 9172 GGACTCGGTATGGAAGTCATGCACGAAAGAAACGCACACAACTTCCCGCTTGACCTTGCG 9231 || ||||||||||| ||||| ||| | || || || |||||||| || ||||| || Sbjct 186992 AACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCC 186933 Query 9232 GCT 9234 ||| Sbjct 186932 GCT 186930 >seq1113 Length=2548689 Score = 84.2 bits (92), Expect = 2e-11 Identities = 76/96 (79%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 8574 TTATATGGGTCGTGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGT 8633 ||||||||||||||| ||||||||| || ||| || || ||||| ||||| || ||| Sbjct 1750632 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGAATTGTTGT 1750573 Query 8634 TGCATACTCTGCTCCTGTTGCCGCTGCTTCTGCTGT 8669 ||||| || ||||| ||||| | ||| ||||||| Sbjct 1750572 CGCATATTCAGCTCCGGTTGCAGTGGCTACTGCTGT 1750537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516460548072000