Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2448 96.9 3e-15 seq958 91.5 1e-13 >seq2448 Length=870776 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||| ||||| || || || ||||| |||| ||||||||||| ||| || ||| | Sbjct 350291 AAATATGCAGATTTTCGTGAAAACCCTAACTGGTAAAACCATAACCTTAGATGTCGAATC 350350 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || |||| || ||| |||||||| || | || ||| Sbjct 350351 ATCCGACACAATCGACAATGTCAAAATCAAGATCCAAGACAAAGAAGGCATCCCACCAGA 350410 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 |||||| | | |||||||| || ||||||||||||||| | ||| | || ||||| Sbjct 350411 TCAACAACGCTTAATCTTTGCTGGGAAACAATTGGAAGATGGAAGAACACTTGCAGATTA 350470 Query 28730 TAACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||||| || ||||| || || || |||| Sbjct 350471 CAACATTCAGAAGGAATCCACGCTTCATTTGGT 350503 >seq958 Length=433838 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 28550 AAAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACC 28609 ||||||||| || || || ||||| |||||||||||||||| ||| ||| ||| | Sbjct 312133 AAAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAAACCATAACCCTAGAAGTCGAATC 312074 Query 28610 TTCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGA 28669 || || || | | | || |||| || ||| |||||||| || | || ||| Sbjct 312073 CTCGGATACCATCGACAATGTCAAAGCCAAGATCCAGGACAAAGAAGGCATCCCACCAGA 312014 Query 28670 TCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTA 28729 ||||| | || ||||| || || ||||| | |||||| ||| | ||||| || Sbjct 312013 CCAACAACGTCTCATCTTCGCCGGAAAACAGCTCGAAGATGGCCGCACTTTAGCCGACTA 311954 Query 28730 TAACATTCAAAAAGAATCTACTCTGCAC 28757 |||||||| || ||||| ||||| ||| Sbjct 311953 CAACATTCAGAAGGAATCCACTCTTCAC 311926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425389178736927