Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq1325 542 3e-149 seq1658 509 2e-139 seq2002 466 2e-126 >seq1325 Length=385796 Score = 542 bits (600), Expect = 3e-149 Identities = 720/991 (73%), Gaps = 9/991 (1%) Strand=Plus/Plus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||| | | |||| ||| | ||| | |||||| |||| ||||| || || || Sbjct 6985 TTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTG 7044 Query 160936 ATGATTCCCTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCC 160994 ||||| || ||| | |||| || | ||| || || | |||||| ||| |||||| Sbjct 7045 ATGATCCCAACCTTATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTCC 7103 Query 160995 CCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 161054 | || || || || || |||||||||| || | || || || | || |||||||| Sbjct 7104 TCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAA 7163 Query 161055 CATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCAT 161114 || || || ||||| |||| ||| ||||| ||||| || ||||||| || || || Sbjct 7164 TATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAAT 7223 Query 161115 CTGGGAAGCAGCAAGTCTG--GACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 161172 ||||||||||| ||| | || || ||| | |||||||| ||||||| |||| || Sbjct 7224 ATGGGAAGCAGC--GTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATT 7281 Query 161173 GTGTTCCACTTCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAACTTTCTTA 161231 || | |||| | |||| | ||| ||| ||||||||||||||||||||| || Sbjct 7282 GTTCTAAACTTTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTT 7340 Query 161232 CCGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAG 161291 ||||||||| ||||| ||||||||| || ||||| || ||||| || || || || | Sbjct 7341 CCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTAC 7400 Query 161292 TGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGG 161351 || || ||| || |||| | | |||||||| || ||||||| |||||||| || Sbjct 7401 TGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGG 7460 Query 161352 CATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCA 161411 |||||| |||| ||||||| ||| |||| ||||| || ||||||||||| || ||||| Sbjct 7461 AATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCA 7520 Query 161412 CCCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCA 161471 || || | ||| | || ||||| |||||||| | || ||||| | ||||| ||||| Sbjct 7521 TCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCA 7580 Query 161472 CGGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTA 161531 ||||| |||| || ||| || | | |||||||| |||| || || || | Sbjct 7581 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGA 7640 Query 161532 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTT 161591 ||||||| ||| | ||||| ||||| || || || || || ||||| || || || || Sbjct 7641 GGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTT 7700 Query 161592 CGGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCT 161651 ||| || |||| || ||||| ||| ||||||||||| || || | | ||||||| | Sbjct 7701 CGGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTT 7759 Query 161652 TGCTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATT 161711 |||||||||||||| || || || ||||| ||||| | || | || || ||||| || Sbjct 7760 AGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTT 7819 Query 161712 CAACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAA 161771 |||| | ||||||||||| |||||||| ||| | ||||||||||| ||| || || | Sbjct 7820 CAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCA 7879 Query 161772 CACCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAA 161831 || ||||| || | | |||| |||| |||| |||||||| ||||| || || || Sbjct 7880 TACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAA 7939 Query 161832 TGCTCACAACTTCCCTCTTGACCTTGCTGCT 161862 |||||| |||||||||| ||||| || ||| Sbjct 7940 TGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 509 bits (564), Expect = 2e-139 Identities = 709/989 (72%), Gaps = 12/989 (1%) Strand=Plus/Minus Query 160884 CTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCC 160943 |||| | || ||||| || ||||| |||||| |||| ||||| || || ||||||| || Sbjct 187916 CTGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC 187857 Query 160944 CTGCTTGCTCGCTGCTACCATTTGT-TTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGG 161002 ||| | |||| || | ||| || || || |||||| ||| |||||| | | | Sbjct 187856 TACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAG 187798 Query 161003 ACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCT 161062 | || || || ||||||||||| || | || || || | || ||||| || || || | Sbjct 187797 ATATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTT 187738 Query 161063 CTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAG 161122 | ||| | |||| ||| ||| | | | | || ||||||| || || || || |||| Sbjct 187737 CGGGTACCATTATTCCTACTTTTGCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAAG 187678 Query 161123 CAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTGTGTTCCACT 161182 | || | || || ||| | |||||||||||||||| |||| |||| | |||| Sbjct 187677 CGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACT 187618 Query 161183 TCCTGATTGGCATCT-ATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACCGTCTGGGA 161241 | | |||| | ||| ||| ||||||||||||||||||||| || |||||| || Sbjct 187617 TTTTACTTGGTGTAGCATG-TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGT 187559 Query 161242 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTC 161301 ||||| ||||||||| || ||||| | |||| | || || || | ||| || ||| Sbjct 187558 ATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTC 187499 Query 161302 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGCATCTCTGGT 161361 || |||| || | |||||||| || | ||||| |||||||| | ||||||||| Sbjct 187498 TTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGT 187439 Query 161362 ACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCACCCCTTCCAT 161421 || ||||||| ||| |||| ||| | || ||||||||||| || ||||| || || || Sbjct 187438 ACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCAC 187379 Query 161422 ATGCTCGGCGTAGCAGGTG--------TGTTTGGCGGTTCTCTGTTCAGTGCAATGCACG 161473 ||| | || ||||| |||| | || ||| | ||||| | ||||| ||||| | Sbjct 187378 ATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCATG 187319 Query 161474 GTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTATG 161533 |||| |||| | ||| || || | |||||||| ||||| || || || | | Sbjct 187318 GTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGG 187259 Query 161534 GTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTCG 161593 |||||| ||||| ||||| ||||| || || || || || ||||| || || || |||| Sbjct 187258 GTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCG 187199 Query 161594 GTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTTG 161653 || |||| || ||||| || |||||| |||| || || | ||||||||| | | Sbjct 187198 CCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAG 187139 Query 161654 CTGCTTGGCCTGTTGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCA 161713 ||||||||||||| || || || ||||| | ||| | || | || || ||||| |||| Sbjct 187138 CTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCA 187079 Query 161714 ACCTGAATGGTTTCAACTTCAACCAGTCTATCGTTGATAGTCAGGGTAAAGTTATCAACA 161773 || | ||||||||||| |||||||| ||| | ||||||||||| ||| || || || | Sbjct 187078 ACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATA 187019 Query 161774 CCTGGGCAGACGTTCTCAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGCAATG 161833 | ||||| || | | ||||||||| ||||| |||||||| ||||| || || |||| Sbjct 187018 CTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATG 186959 Query 161834 CTCACAACTTCCCTCTTGACCTTGCTGCT 161862 |||| ||||||||||| ||||| || ||| Sbjct 186958 CTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq2002 Length=1023113 Score = 466 bits (516), Expect = 2e-126 Identities = 703/992 (71%), Gaps = 13/992 (1%) Strand=Plus/Plus Query 162144 AGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTT 162203 || ||||||||||||||||| || |||||||| || | || |||| ||||||| | Sbjct 167455 AGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTTCGTG-TGCTTATTTC 167513 Query 162204 GCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGGTATACTCACGGACTT 162263 || | || |||||| |||| || || || || || || |||||||| || ||| | Sbjct 167514 GCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTG 167573 Query 162264 GCGAGTTCCTATCTTGAGGGT-GCAAACTTTCTTA-CTGCGGCAGTTTCTACTCCAGCAG 162321 || ||||| ||| | || ||| |||| ||||||| | ||| ||||||||||||| || Sbjct 167574 GCCAGTTCTTATTTGGAAGGTTGCAA--TTTCTTAACCGCGACAGTTTCTACTCCTGCTA 167631 Query 162322 ACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGTCCTGAGTCTCAAGGGGACTTCATCC 162381 | | | | || ||| | || | || |||||||| || | ||||| ||||| | | Sbjct 167632 ATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCACAAGGAGACTTTACTC 167691 Query 162382 GCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGGAGCCTTTGCACTTA 162441 | ||||| ||| | || || || ||||||||||| || || || || || || ||||||| Sbjct 167692 GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCATGGTGCTTTCGCACTTA 167751 Query 162442 TAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGACTTATCGGT---ATT-CGTCCTTAC 162497 ||||||| ||| | || || || || || || ||| || || ||| || ||||| Sbjct 167752 TAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGA----TCCGTTCAATTGCGCCCTTAT 167807 Query 162498 AATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTCTTATCTATCCT 162557 ||||| || || || || ||||| |||||||| || ||| ||| || || || ||||| Sbjct 167808 AATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTAATTTATCCA 167867 Query 162558 TTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTC 162617 | || || || |||||||| ||||| || || | ||||| || || |||||| Sbjct 167868 CTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGCTATATTTCGATTC 167927 Query 162618 CTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTA 162677 | ||||| | |||||||| ||||| ||||| || ||||| ||||| |||||||| || Sbjct 167928 ATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCATATGATGGGAGTT 167987 Query 162678 GCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACA 162737 || ||| | | || | || | || | ||||||||||| | || || ||||||| Sbjct 167988 GCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTACCGTAGAAAATAAT 168047 Query 162738 CTGTACGAAGATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAA 162797 | | ||||| || || ||||| || || || ||| || | || || | ||| Sbjct 168048 TTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCCAACCCAAGCCGAA 168107 Query 162798 GAAACGTATTCGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTT 162857 ||||| ||||| ||||| || || |||||||| ||||| || ||||| || |||||||| Sbjct 168108 GAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTTTGGCGTTGCTTTT 168167 Query 162858 AGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACA 162917 || || ||||||| |||||||||||| | ||||| || || | ||| | |||| Sbjct 168168 TCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTATGGATG 168227 Query 162918 AGTTCTATCGGTATTATTGGACTCGCTCTCAATCTTCGTGCTTACGACTTTGTATCTCAA 162977 ||| || | || | | || | ||| | || || ||||| || ||||| | || || Sbjct 168228 AGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGACTTCATTTCCCAG 168287 Query 162978 GAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTG 163037 ||| | ||||| || ||||| ||||| ||||| || ||||| || || || ||||| | Sbjct 168288 GAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAAAAATATTCTCTTA 168347 Query 163038 AATGAAGGACTTCGAGCATGGTTAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTC 163097 || ||||| |||| || ||| | || | || || |||||||| ||| || | ||| Sbjct 168348 AACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTC 168407 Query 163098 CCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 ||||| ||||| | || | || |||||||| Sbjct 168408 CCTGAGGAGGTTCTACCCCGTGGAAACGCTCT 168439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547726570471080