Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1325 423 6e-114 seq1658 399 7e-107 >seq1325 Length=385796 Score = 423 bits (468), Expect = 6e-114 Identities = 689/987 (70%), Gaps = 9/987 (1%) Strand=Plus/Minus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 |||| ||| | |||||||||||||||||||| || ||||||||||| | |||| |||| Sbjct 7966 GCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 7907 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAATG 17951 || ||| | | |||||||| ||| | | || | ||| | | | ||||| Sbjct 7906 GCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACA--- 7850 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| ||||| ||||| | || || |||||||| || || | || ||| Sbjct 7849 GATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTA 7790 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | || ||||||||||| |||||||| ||| | | ||||| Sbjct 7789 AACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTTG 7731 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || |||||||| || ||||| | || || || || |||||||| || ||||||||||| Sbjct 7730 AAACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAA 7671 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||| ||||| | ||| | || || | || ||| ||| | || ||||| Sbjct 7670 GTTTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCC 7611 Query 18192 CTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 18251 || || | ||||| || | || ||||||||| | | || || |||| Sbjct 7610 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAAC 7551 Query 18252 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAAT 18311 || || || ||||| | ||| | || |||||||||||||| ||||| || || |||||| Sbjct 7550 ACACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAAT 7491 Query 18312 ACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCT 18371 || | ||| || |||||||||| || || ||||||||||||||||| || || ||| Sbjct 7490 ACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCT 7431 Query 18372 TGTCCAAAAGGATAAA-CGAGAAATACTGAGAAGGCAGCTGCTACTGGTGCGGAATAAGC 18430 || |||| | || | | ||||| || || | ||||| || || || ||||| || Sbjct 7430 TGACCAATTAGGTAGATCAAGAAAACAACAGTAGCC-GCTGCAACCGGAGCTGAATATGC 7372 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| ||||||||||| || | ||||||||||||| | || ||||| || Sbjct 7371 AACATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 7312 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | ||| | || | | ||||| | ||||| |||| ||| || |||||||| ||||| Sbjct 7311 ACATGCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAA 7252 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 |||||| || | | || |||||||| ||||| || ||||| | || || || ||| Sbjct 7251 CCACTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGA 7192 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || || || || || |||||||| || |||| | || || ||| | Sbjct 7191 AGTAGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAG 7132 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || |||||||||||| || || | | |||| | | Sbjct 7131 TTCACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAGA 7072 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || ||| || || | | |||||||| | || |||||||| || | || || | ||| Sbjct 7071 AGTTGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTT 7012 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 || || | || | | ||| ||| || Sbjct 7011 TTTAGTGTTGGTTATCAAGTTACAGAA 6985 >seq1658 Length=355568 Score = 399 bits (442), Expect = 7e-107 Identities = 687/989 (69%), Gaps = 20/989 (2%) Strand=Plus/Plus Query 17835 GCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTTA 17894 |||| ||||| |||||||||||||||||||| || ||||||||||| | ||||||||| Sbjct 186934 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 186993 Query 17895 GCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAATG 17951 || | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 186994 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACA--- 187050 Query 17952 GATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 18011 ||||||||||| ||||| ||||| | || || |||||||| || || | || || Sbjct 187051 GATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAATA 187110 Query 18012 AGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTA 18071 | ||| || | || ||||||||||| |||||||| |||| | | | ||| Sbjct 187111 AACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTTG 187170 Query 18072 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATAC 18131 || |||| ||| || ||||| | || | || || |||||||| || ||||||||||| Sbjct 187171 AAACTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATAA 187230 Query 18132 GTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCT 18191 || ||||| ||||| || ||| | || || | || ||| ||| || || ||||| Sbjct 187231 GTTTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTCC 187290 Query 18192 CTAAT-AAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAA 18250 ||||| || || || || |||| || ||||||||| | | || | ||||| Sbjct 187291 CTAATCAAACTAGAAATTACCAAGGAA-CCATGCATAGCACTAGAAAGAGAGCGGCCGAA 187349 Query 18251 TACCCCTG--------CAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCG 18302 ||| || | | ||||| | ||| || || |||||||||||||| ||||| || Sbjct 187350 TACACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCA 187409 Query 18303 GCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAG 18362 || | |||||| | ||| || ||||||||||| || | ||||||||||||||| | Sbjct 187410 GCCTAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAA 187469 Query 18363 AAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTG 18420 || || ||||| |||| || || | | ||||| || | || || | ||||| | | | Sbjct 187470 AATCTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCAGTAGCC-GCTGCAATCAGAG 187527 Query 18421 CGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTC 18480 | |||| |||||| |||||| |||||||||||||| | ||||||||||||| | | Sbjct 187528 CTAAATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCAC 187587 Query 18481 GTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTC 18540 | ||||| ||| ||| | || | | |||||| | ||||| |||| ||| || || | Sbjct 187588 GACCCATATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCAC 187647 Query 18541 CGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGA 18600 |||| ||||||||||| || | || ||||| || ||||| || ||||| | || | Sbjct 187648 CGTTGTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTA 187707 Query 18601 TTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTC 18660 | | | | || | || | || || || || || ||||| || |||| | | Sbjct 187708 CAACTGCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACC 187767 Query 18661 CTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA 18720 | || ||||| |||||||||||||| || || | |||||||||||| || || || | Sbjct 187768 CGGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAA 187827 Query 18721 AAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGT 18780 |||| | | || ||| || || | | ||||||||| | || |||||||| || | | Sbjct 187828 TAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATAT 187887 Query 18781 AGAGGCGGTTGTTTGTACTCGTAACCCAG 18809 | || ||||| | || || || | |||| Sbjct 187888 AAAGACGGTTTTCAGTGCTAGTTATCCAG 187916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151312985922222