Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq2002 506 3e-138 seq1325 446 2e-120 seq1658 398 1e-105 >seq2002 Length=1023113 Score = 506 bits (560), Expect = 3e-138 Identities = 717/1004 (71%), Gaps = 3/1004 (0%) Strand=Plus/Minus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | || | ||||| ||||| |||| || ||||||||| || ||||| Sbjct 168439 AGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCTGATCT 168380 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | |||| ||| ||||| | |||||| || || || || || || |||||||| || Sbjct 168379 TGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGAAAGTT 168320 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || || |||||||| ||||| | ||| || ||||| | |||||||| ||||| ||| Sbjct 168319 TCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAATGAAGTCATAGGCACGTAGG 168260 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| | ||| | | || | | ||| |||| | ||| | || || ||||| Sbjct 168259 TTCAAAGCCATACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTACAAAT 168200 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||||||||||| ||||| | ||||| ||| |||| ||||| ||||| ||||| Sbjct 168199 AACATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACGCCAAAAATTTGGGACCAA 168140 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 168139 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGGGTTGGGTTAAAAGCCCGG 168080 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| |||||| |||||| | | | | || || || || | || || || Sbjct 168079 AATGTATTTGCCCCATCACCGTCTTCAAATAAATTATTTTCTACGGTAGCGCCATGAATA 168020 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | || || || | |||| | ||| ||||| ||||||||||| ||||| || || Sbjct 168019 GCGCATAGTAGAGCGGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGATTCAGT 167960 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 ||||| ||||| || || || | ||||| | ||||| |||||| ||||| | |||||| Sbjct 167959 GTCCAATTATGAAACCCTTGAAAAAAGAGAATGAATCGAAATATAGCTGCTATACCAAAA 167900 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 || ||||||||||||| ||||| || || ||||| || || || ||| |||||| Sbjct 167899 CTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGGAATACAGAAACAAAA 167840 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 ||||| || || ||||| || || || ||||| || || || | | || | | ||| Sbjct 167839 ACAGCAATTGGACCAGATAATGCGATTGCATTATAAGGGCGCAATTGAACGGATCGAGCA 167780 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | |||||||||||| | ||| ||||| || || || || ||||| || ||||| |||||| Sbjct 167779 AGCTCGAATTGACGTAACATAAAACCTATAAGTGCGAAAGCACCATGAAGAGCAACAAAA 167720 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAA-TCTCCTTGAGCTTCAGGACCCCA 102488 | ||| || || || | ||| ||| | || ||| |||||||| ||||| |||||||| Sbjct 167719 GTCCACAGGCCGCCTAATTGACACCAAC-GAGTAAAGTCTCCTTGTGCTTCGGGACCCCA 167661 Query 102489 AAGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAA 102548 |||| | | ||| || | | | | |||||| || || || | || || | ||| Sbjct 167660 CAGTAACAATAAAGAGTGGGCTAAACTATTAGCAGGAGTAGAAACTGTCGCGGTTAAGAA 167601 Query 102549 ATTAGCACCTTCAAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAACGT 102608 ||| |||||| | ||| | || | || ||||||||||| ||||| |||| || Sbjct 167600 ATTGCAACCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTACAAAGGT 167541 Query 102609 CGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCAGA 102668 || || |||| ||| || || | |||| ||||||| |||| || | ||| ||||| Sbjct 167540 TGTACCTGTAAACCAACCTCCTAAGGCGAAATAAGCA-CACGAAAGAGCAATAGCCCAGA 167482 Query 102669 CCAACCCACAAAGACAAAGCGATCTCGTTTAATCCAGTCATCCA 102712 |||||| ||||| || || || || | | ||||||||||| Sbjct 167481 CCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCA 167438 >seq1325 Length=385796 Score = 446 bits (494), Expect = 2e-120 Identities = 684/973 (70%), Gaps = 15/973 (2%) Strand=Plus/Minus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 ||| || ||||| | |||||||| ||||| ||||| || ||||| ||||||||||| | Sbjct 7970 AGCGGCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAA 7911 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| |||| | | || ||||| || | | |||||||| |||| ||||| | Sbjct 7910 GTTAGCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTAC 7851 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| || || | |||||| ||||| || |||| ||| | || || Sbjct 7850 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGT 7791 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 ||||| ||||| ||||| || | |||||||| Sbjct 7790 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGGTAAAGAAC-GAGAGTTGTT 7732 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| || ||||| |||||||| || ||||| ||||||||||| ||||| || || || Sbjct 7731 GAAACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATA 7672 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || ||||||||||| | ||| ||||||| | || ||||||| ||| || || || Sbjct 7671 AGTTTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTC 7612 Query 103531 AC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || | | | || | || |||| ||||| ||||||||||| | || || || ||| Sbjct 7611 CCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTATAAAGAGAGCCTTCGA 7553 Query 103590 AGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTCGGCTTGGA 103649 | || ||||| || || | |||| | || || ||||| || ||||| || || || |||| Sbjct 7552 ACACACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGA 7493 Query 103650 AGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGAGAACGAAC 103709 | || | ||| ||||||| || | || || || | ||||||| |||| || || | Sbjct 7492 ATACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTC 7433 Query 103710 CTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGCAGAGTATG 103769 ||||||||| |||||| |||||| || | | || || ||||| ||||| || |||| Sbjct 7432 CTTGACCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATG 7373 Query 103770 CGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACGTCCCATAT 103829 | ||| ||||| |||||||| ||||||||| | | |||||||||||| ||||||| Sbjct 7372 CAACATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATAT 7313 Query 103830 ---ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACCGTTAT 103886 |||| || | |||| | |||| | || | |||| ||||||| ||||| | Sbjct 7312 AACATGC-TACA--CCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGT 7256 Query 103887 ACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAATTGCGT 103946 | | ||||||||||| || ||||||||||| || ||||| ||||| | || || || Sbjct 7255 ATAACCACTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGC-- 7198 Query 103947 TGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAACCAGC 104004 || || || |||| || ||||| || || || ||||| ||||| | || || || | Sbjct 7197 TGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGA 7138 Query 104005 GACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACGATGAA 104064 || |||||||||| || || ||||| || |||| || || | ||| || | || || Sbjct 7137 AACAAGTTCACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAA 7078 Query 104065 -GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACATAGA 104123 |||| ||||| | ||| | ||||||||||||| ||||| ||||| |||| ||| | Sbjct 7077 TACAGA-AGTTGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAA 7019 Query 104124 GACGGTTGTTTGT 104136 ||| ||| || || Sbjct 7018 GACTGTTTTTAGT 7006 >seq1658 Length=355568 Score = 398 bits (440), Expect = 1e-105 Identities = 673/975 (69%), Gaps = 22/975 (2%) Strand=Plus/Plus Query 103171 AGCAGCAAGGTCAAGGGGGAAGTTGTGAGCGTTACGCTCGTGCATGACTTCCATACCCAG 103230 ||| || ||||| || |||||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 186930 AGCGGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 186989 Query 103231 ACCAGCGCGGTTGAGAACGTCTGCCCAGGTGTTCAACACACGACCCTGACCATCAAGGAT 103290 ||| ||||| | | || ||||| || || | |||||||| |||| ||||| | Sbjct 186990 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 187049 Query 103291 GGACTGGTTGAAGTTGAATCCGTTCAGGTTGAACGCCATGGTGCTAACACCAAGTGCGGT 103350 || |||||||| ||||| || || | |||||| ||||| || |||| ||| | || | Sbjct 187050 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAAT 187109 Query 103351 GAACCAGATACCCACTACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGTTGTT 103410 ||||| ||||| ||||| || | |||| ||| Sbjct 187110 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTT 187169 Query 103411 GAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACGATGTTGTA 103470 ||| | ||||| |||||||| || |||| ||||||||||| ||||| || || || Sbjct 187170 GAAACTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATA 187229 Query 103471 TGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCAGTCGTCTC 103530 || ||||||||||| ||||| ||||||| | || ||||||| |||| || || || Sbjct 187230 AGTTTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTC 187289 Query 103531 ACGAACCAG-CGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGAACCACCGA 103589 | || || | || | || |||| ||||| ||||||||||| | || || | |||| Sbjct 187290 CCTAATCAAACTAGAAATTACCAAG-GAACCATGCATAGCACTAGAAAGAGAGCGGCCGA 187348 Query 103590 AGACTCCAG--------CAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641 | || |||| | || || | |||||| || || ||||| || ||||| || || Sbjct 187349 ATACACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTC 187408 Query 103642 GGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGA 103701 || | ||| || | ||| ||||||| || || || || | | ||||||| |||| | Sbjct 187409 AGCCTAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATA 187468 Query 103702 GAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGC 103761 || |||||||||| ||||||| |||||| || || | || || |||| |||| Sbjct 187469 AAATCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGC 187528 Query 103762 AGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACG 103821 | ||||| ||| ||||| |||||||| || |||||| | | |||||||||||| Sbjct 187529 TAAATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACG 187588 Query 103822 TCCCATAT---ATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACC 103878 ||||||| |||| || | |||| | ||||| | || | |||| ||||||| Sbjct 187589 ACCCATATAACATGC-TACA--CCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 187645 Query 103879 ACCGTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACC 103938 |||||| || | ||||||||||| | || ||||| || || ||||| ||||| | || Sbjct 187646 ACCGTTGTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCC 187705 Query 103939 AATTGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGT 103996 | | || | || |||| || | ||| || || || || || ||||| | || Sbjct 187706 TACAAC--TGCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGA 187763 Query 103997 GAACCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCA 104056 || || | || ||||||||||| || || ||||| | |||| || || | ||| || Sbjct 187764 GACCCGGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCT 187823 Query 104057 ACGATGAA-GCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACC 104115 | || || |||| ||||| | ||| | || |||||||||| ||||| ||||| || Sbjct 187824 ATAATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 187882 Query 104116 AACATAGAGACGGTT 104130 || ||| |||||||| Sbjct 187883 AATATAAAGACGGTT 187897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633489740294040