Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1325 403 5e-108 seq1658 396 8e-106 >seq1325 Length=385796 Score = 403 bits (446), Expect = 5e-108 Identities = 672/966 (70%), Gaps = 9/966 (1%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| | |||||||| || || || || |||||||| || || | |||| ||| Sbjct 7966 GCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 7907 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 ||| |||||| || |||||||| || | || || | || | | | | | | |||| Sbjct 7906 GCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACAGAT 7847 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| |||||||| ||||| ||| | || | |||| |||| Sbjct 7846 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTAAAC 7787 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAA-TGAAGACTACGGGAATTATTAAA 21709 ||||||||||| |||||||| ||||| | ||||| | |||| ||| || || || || Sbjct 7786 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGGTAAAGA--ACGAGAGTTGTTGAA 7729 Query 21710 GCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGT 21769 ||||||||||| ||||| | || || ||||| || |||||||| |||||||| ||||| Sbjct 7728 ACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAAGT 7669 Query 21770 CTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACG 21829 ||||||||||| | || ||||||| | || || | | || || || || | Sbjct 7668 TTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCCCT 7609 Query 21830 AATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATAC 21889 || | || || |||| | ||| ||||||||| | | | || | || || Sbjct 7608 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAACAC 7549 Query 21890 GCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACAC 21949 || || ||||| | |||| |||| ||||||||||| || ||||||||||||||||| || Sbjct 7548 ACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATAC 7489 Query 21950 CAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTG 22009 | ||| ||||||| || | || || || | |||||| |||||||||| || || Sbjct 7488 AATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 7429 Query 22010 TCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAAC 22069 |||| | || | | ||| ||| |||| || || || || ||||| || || ||||| Sbjct 7428 ACCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGCAAC 7369 Query 22070 AAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGC 22129 | ||||| || | ||| || || || | |||||||||||||| || ||||| ||| Sbjct 7368 ATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 7309 Query 22130 AAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCA 22189 || |||| | |||| | || | |||| | ||||| |||||||| | ||| Sbjct 7308 TGCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAACCA 7249 Query 22190 TTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCT 22249 ||||||| | || |||||||| ||||| || ||||| | || || || | | Sbjct 7248 CTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGT 7189 Query 22250 CGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTC 22309 |||| | ||| || || || || ||||| || || | || || || | || |||| Sbjct 7188 AGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAGTTC 7129 Query 22310 TCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA---ACAAGT 22366 || || ||||| || || || | || || ||| ||||| | |||||| | |||| Sbjct 7128 ACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAGAAGT 7069 Query 22367 TGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || | | ||| ||| || ||||| | || || |||||||| | |||||||| ||| Sbjct 7068 TGCA--GTCAATAAGG-TTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTT 7012 Query 22427 ATTAGT 22432 ||||| Sbjct 7011 TTTAGT 7006 >seq1658 Length=355568 Score = 396 bits (438), Expect = 8e-106 Identities = 679/979 (69%), Gaps = 26/979 (3%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 186934 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 186993 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || |||||||| || || || || | || | | | | | | |||| Sbjct 186994 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 187053 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| |||||||| ||||| ||| | || | ||| |||| Sbjct 187054 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAATAAAC 187113 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||||||||| |||||||| ||||| | ||||| || | | ||| || | || || Sbjct 187114 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTTGAAA 187173 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 |||| |||||| ||||| | || | ||||| || |||||||| |||||||| ||||| Sbjct 187174 CTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATAAGTT 187233 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||||||||| || || ||||||| | || || | | ||| || || || | | Sbjct 187234 TCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTCCCTA 187293 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCA-GAGAACAAACTCCCACCAAATA- 21888 || | || | |||| | ||| ||||||||| |||| | | | || |||| Sbjct 187294 ATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTAGAA-AGAGAGCGGCCGAATAC 187352 Query 21889 -------CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCC 21941 | || || ||||| | ||||||||| ||||||||||| || |||||||||||| Sbjct 187353 ACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 187412 Query 21942 TGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAA 22001 | ||| || | ||| ||||||| || || || || | | |||||| ||||| |||| Sbjct 187413 TAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAT 187472 Query 22002 GAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAG 22061 || || |||| || || | | ||| |||||||| || || || | |||| | Sbjct 187473 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGCTAAA 187532 Query 22062 TACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCC 22121 || ||||||| ||||| || | ||| ||||| || | |||||||||||||| || ||| Sbjct 187533 TATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGACCC 187592 Query 22122 ATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTG 22181 || ||| || |||| | ||||| | || | |||| | ||||| |||||| Sbjct 187593 ATATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTG 187652 Query 22182 TACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCA 22241 || | ||| ||||||| || ||||| || ||||| || ||||| | || | || Sbjct 187653 TATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTA---CA 187709 Query 22242 TTACTGC-----TCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGC 22296 ||||| | |||| | || || || || || || || || || | || || | Sbjct 187710 --ACTGCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACC 187767 Query 22297 CAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAA 22356 | | || ||||| || || ||||| || || | | || || ||| ||||| |||| Sbjct 187768 CGGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAA 187827 Query 22357 TAAA---ACAAGTTGTAGCGGCAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTA 22413 |||| | |||||| | | ||| ||| | || ||||| | || || |||||||| | Sbjct 187828 TAAATACAGAAGTTGCA--GTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAA 187884 Query 22414 CATAAAGACGGTTATTAGT 22432 |||||||||||| | ||| Sbjct 187885 TATAAAGACGGTTTTCAGT 187903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146202768769140