Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq1325 468 7e-127 seq2002 461 1e-124 seq1658 425 7e-114 seq2301 113 6e-20 seq2646 107 3e-18 >seq1325 Length=385796 Score = 468 bits (518), Expect = 7e-127 Identities = 679/952 (71%), Gaps = 5/952 (1%) Strand=Plus/Minus Query 26746 GGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAGACCAGCACGGTTGAGA 26805 || || ||||| || || | ||| || || || || | |||| |||| |||| | Sbjct 7954 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTAGCATGGTTAATG 7895 Query 26806 ACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCACAGACTGATTGAAGTTG 26865 | || |||||||| | | |||||||| || ||||| ||||| || ||||| ||| Sbjct 7894 ATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACAGATTGGTTGAAATTG 7835 Query 26866 AAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGTGAACCAGATGCCAACA 26925 ||||| || | ||||| ||||| || | ||| | || || ||||| || || || Sbjct 7834 AAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 7775 Query 26926 ACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGG 26985 || ||||| ||||| | ||||||| | || ||||| ||||||||||| ||||||||| Sbjct 7774 ACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTTGAAACTAGCATATTGA 7716 Query 26986 AAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGA 27045 |||||||| || ||||| || ||||| || || || || || || || ||||| ||||| Sbjct 7715 AAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAAGTTTCTTCCTCTTGC 7656 Query 27046 CCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGAT 27105 | ||| | ||||| | || || ||| ||| || || || | || | ||| Sbjct 7655 CTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCCCTGATCAAACTAGAA 7596 Query 27106 GTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCG 27165 || |||| || ||||||||| ||||||| || |||| || ||||| ||||| Sbjct 7595 GTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAACACACCAGCTACACCT 7536 Query 27166 AGCATGTGGAACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTA 27225 | |||| | || || ||||||||||| ||||| || ||||||||||||| ||| |||| Sbjct 7535 AACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 7476 Query 27226 AAAGTACCAGAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAG 27285 ||||||| |||||| || ||||||||| |||| || || |||||||| | | ||| Sbjct 7475 AAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGACCAATTAGGTAG 7416 Query 27286 ACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGA 27345 | | ||| || || | || || || || ||||| |||||||| ||| ||||| || Sbjct 7415 ATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGCAACATCAATCCAAGGG 7356 Query 27346 CGCATACCTAAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCAT-AGATGCCGAT 27404 |||||||| | ||| | |||||||||||||| ||||||||| ||| | || | Sbjct 7355 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAA-CATGCTACACCAAG 7297 Query 27405 AAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGA 27464 | |||| | || | |||| ||||||| ||||| || ||||||||||| | || Sbjct 7296 TAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAACCACTCATCAACCGA 7237 Query 27465 TGCTGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGC 27524 ||||||||||| ||||| || ||||| | || || || ||| | || | || || Sbjct 7236 CGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTAGGAATAATGGC 7177 Query 27525 ACCAGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTC 27584 ||| ||||| || ||||| || || | || || || | ||| ||||||||||||| || Sbjct 7176 ACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAGTTCACGAATACCATC 7117 Query 27585 AATATCGACGGGTGGTGCTGCGATGAATGCGACAATGAA-GCAGACAGTTGCTGCTAACA 27643 |||||| || | || || || ||||| || | ||| || |||| |||||| | || | Sbjct 7116 AATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAGA-AGTTGCAGTCAATA 7058 Query 27644 GTGTTGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGT 27695 ||||||||||||| ||||| ||||| |||| ||| | || ||| ||||| Sbjct 7057 AGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTTTTTAGT 7006 >seq2002 Length=1023113 Score = 461 bits (510), Expect = 1e-124 Identities = 710/1009 (70%), Gaps = 3/1009 (0%) Strand=Plus/Minus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | || || | |||||| | || |||||| || || | Sbjct 168444 ATTAAAGAGCGTTTCCACGGGGTAGAACCTCCTCAGGGAATATAAGGTTTTCATGAGGCT 168385 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 | || || | |||||| |||| | || | ||| || | ||||||||| ||||||| Sbjct 168384 GATCTTGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAGAGAATATTTTTGGTGTAGA 168325 Query 23506 AGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAGCAC 23565 | || ||| | | |||||| || ||||| || || || | || ||||| |||| Sbjct 168324 AAGTTTCAAATTCAGGATCTTCCGCTGCACGGATTTCCTGGGAAATGAAGTCATAGGCAC 168265 Query 23566 GAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAGGAA 23625 | || || | ||| | || | | |||| || | | ||| | ||| | || || | Sbjct 168264 GTAGGTTCAAAGCCATACCGACTACTCCAAGAGCACTCATCCATAAACCGGTTACTGGTA 168205 Query 23626 CAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGTG 23685 |||| ||||||||||| || ||||||| |||||| ||| ||||| || || ||||| | Sbjct 168204 CAAATAACATAAAGAAATGTAACCAACATTTATTGGAAAAAGCAACGCCAAAAATTTGGG 168145 Query 23686 ACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAACG 23745 ||||||| || || || || ||||| ||||| || || || | || || | | || | Sbjct 168144 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCGGCTTGGGTTGGGTTAAAAG 168085 Query 23746 CTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCAT 23805 | || || |||||| || || |||||| | | |||| || || ||| | |||| Sbjct 168084 CCCGGAATGTATTTGCCCCATCACCGTCTTCAAATAAATTATTTTCTACGGTAGCGCCAT 168025 Query 23806 GAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGT 23865 ||||||| | || || || | |||| || ||| ||||||||||||||||| || || | Sbjct 168024 GAATAGCGCATAGTAGAGCGGCGCCCAATACACCGGCAACTCCCATCATATGAAATGGAT 167965 Query 23866 TGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACAC 23925 | || ||||| |||||||| || || | ||||||| ||| | || || || || | || Sbjct 167964 TCAGTGTCCAATTATGAAACCCTTGAAAAAAGAGAATGAATCGAAATATAGCTGCTATAC 167905 Query 23926 CGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAGACA 23985 | ||||| || |||||||||||| ||||| || | ||||| || ||||||||||| | Sbjct 167904 CAAAACTAGGTGCAAAGAACCAACCAGACTGACCTAGTGGATAAATTAGGAATACAGAAA 167845 Query 23986 CGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTAGAC 24045 | || |||||||| |||||||| || || || ||||| || || || | | || | Sbjct 167844 CAAAAACAGCAATTGGACCAGATAATGCGATTGCATTATAAGGGCGCAATTGAACGGATC 167785 Query 24046 GTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAGCAA 24105 | || || || || |||||||||||||||||||||||||| || ||||| || ||||||| Sbjct 167784 GAGCAAGCTCGAATTGACGTAACATAAAACCTATAAGTGCGAAAGCACCATGAAGAGCAA 167725 Query 24106 CAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAGGAC 24165 |||| | ||| || || || | ||| ||| || |||||| ||||| | || |||| Sbjct 167724 CAAAAGTCCACAGGCCGCCTAATTGACACCAACGAGTAAAGTCTCCTTGTGCTTCGGGAC 167665 Query 24166 CCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG-TA 24224 |||| |||| | | ||| || | | | | |||||| || || || | || | || Sbjct 167664 CCCACAGTAACAATAAAGAGTGGGCTAAACTATTAGCAGGAGTAGAAACTGTCGCGGTTA 167605 Query 24225 AGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAACA 24284 ||||| || ||| || | ||| ||||| || | ||||||||| ||||| || ||| Sbjct 167604 AGAAA-TTGCAACCTTCCAAATAAGAACTGGCCAATCCATGGGTATACCATGAAGTTACA 167546 Query 24285 AAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGAGT 24344 || | ||| || |||| |||||| || | ||| | ||||||| | ||| || | || Sbjct 167545 AAGGTTGTACCTGTAAACCAACCTCCTAAGGCGAAATAAGCACACGAAAG-AGCAATAGC 167487 Query 24345 CCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCA 24393 ||||||||||| ||||| || || || |||| | |||||| |||| Sbjct 167486 CCAGACCAACCTACAAAAACGAAACGGTCCCTCCGTAACCAGTCATCCA 167438 >seq1658 Length=355568 Score = 425 bits (470), Expect = 7e-114 Identities = 685/979 (70%), Gaps = 18/979 (2%) Strand=Plus/Plus Query 26730 AGCAGCAAGATCCAATGGAAAATTATGGGCGTTCCTTTCGTGAATCACCTCTAATCCAAG 26789 ||| || || || | || || ||||| || || | ||| || || || || | ||||| Sbjct 186930 AGCGGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 186989 Query 26790 ACCAGCACGGTTGAGAACGTCTGCCCAAGTGTTGAGCACACGACCCTGTGAATCAATCAC 26849 ||||||||| | | || |||||||| || | |||||||| || ||||| || Sbjct 186990 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTAC 187049 Query 26850 AGACTGATTGAAGTTGAAACCGTTGAGATTGAAAGCCATCGTGGATACACCAAGTGCGGT 26909 ||| || ||||| |||||||| || | ||||| ||||| || | ||| | || | Sbjct 187050 AGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAAT 187109 Query 26910 GAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTT 26969 ||||| || || || || ||||| ||||| | ||||||||| || ||||| |||| ||| Sbjct 187110 AAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTT 187169 Query 26970 GAATGAAGCATATTGGAAGATCAAACGACCGAAGTAGCCATGTGCTGCGACGATGTTGTA 27029 ||| || |||||| |||||||| || |||| || ||||| || || || || || || Sbjct 187170 GAAACTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATA 187229 Query 27030 GGTCTCTTCTTCTTGACCGAACTTATAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTC 27089 || ||||| ||||| ||||| | ||||| | || || ||| |||| || || || Sbjct 187230 AGTTTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTC 187289 Query 27090 ACGGACGAGTGAAGATGTAACCAGACTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAA 27149 | | | ||| | |||| || ||||||||| ||||||| | ||||| Sbjct 187290 CCTAATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTAGAAAGAGAGCGGCCGAA 187349 Query 27150 TACCCCAG--------CAACACCGAGCATGTGGAACGGGTGCATAAGGATATTGTGTTCT 27201 ||| |||| | ||||| | |||||| || || ||||||||||| ||||| || Sbjct 187350 TACACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCA 187409 Query 27202 GCCTGGAATACAAGCATGTAGTTAAAAGTACCAGAGATACCAAGAGGCATAGCATCGGAG 27261 |||| |||||||| ||| |||| |||||||||||||| | ||||||||| |||| | Sbjct 187410 GCCTAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAA 187469 Query 27262 AAAGAACCTTGACCGAAAGGATAGACGAGGAATACTGCACTCGCAGCAGCGACTGGAGCA 27321 || |||||||| | || |||| | ||| || ||| | || || || | |||| Sbjct 187470 AATCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGCT 187529 Query 27322 GAATATGCTACACAGATCCATGGACGCATACCTAAACGATATGAGAGTTCCCACTCACGT 27381 ||||||| ||| ||||| || |||||||||| ||| | |||||||||||||| Sbjct 187530 AAATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGA 187589 Query 27382 CCCATATAAGCAT-AGATGCCGATAAGGAAGTGGAAGACTACCAGTTGGAAAGGACCACC 27440 ||||||||| ||| | || | | ||||| | || | |||| |||||||||| Sbjct 187590 CCCATATAA-CATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACC 187648 Query 27441 GTTATACAACCACTCATCGAGTGATGCTGCTTCCCAGATTGGGTAGAAGTGGAGAC---C 27497 ||| || ||||||||||| | | || ||||| || ||||| || ||||| | | | Sbjct 187649 GTTGTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTAC 187708 Query 27498 GATTGCATTTGAACTTGGGACAACTGCACCAGAAATGATGTTGTTGCCATACATAAGTGA 27557 | |||| || | || | || | ||| ||||| || || || || || | || || Sbjct 187709 AACTGCA---AAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGA 187765 Query 27558 ACCAGCAACGGGTTCACGAATACCGTCAATATCGACGGGTGGTGCTGCGATGAATGCGAC 27617 || | ||| |||||||||||||| |||||||| | | || || || ||||| || | Sbjct 187766 CCCGGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTAT 187825 Query 27618 AATGAA-GCAGACAGTTGCTGCTAACAGTGTTGGGATCATCAGTACACCGAACCAACCAA 27676 ||| || |||| |||||| | || | || |||||||||| ||||| ||||| |||| Sbjct 187826 AATAAATACAGA-AGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAA 187884 Query 27677 CATACAAACGGTTGTTAGT 27695 ||| | |||||| | ||| Sbjct 187885 TATAAAGACGGTTTTCAGT 187903 >seq2301 Length=244427 Score = 113 bits (124), Expect = 6e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 32624 TCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACAAAC 32683 |||| | ||| ||||| | |||||| | | ||||| |||||||||||||| || || Sbjct 138531 TCTTTGTGAGTCTCAATAGTGACATCACTAATAGGATAAGCAACACAAGTGAGAACCCAC 138472 Query 32684 CCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCAGAT 32743 |||| | || || |||||||||||||| ||||| ||||||||| ||||||| Sbjct 138471 CCTTGAGCCATCTGGTCATCATCCAAGAAGCTTTGATCTGATTGGTCTACACTACCAGAA 138412 Query 32744 ACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCAACC 32803 | ||| || |||| || || || || ||||| || || ||||| || || ||| Sbjct 138411 GTCACCTTCCCGACACATGAGGAGCACGCGCCTGCCCGGCATGAGTAAGGCAAGTCCACC 138352 Query 32804 CCACCTTCCT-CTGCTGCATCAAGGATGTATTGATCATC 32841 ||| | ||| |||| ||||| | |||||| | |||||| Sbjct 138351 CCA-TTCCCTCCTGCAGCATCCAAGATGTACTCATCATC 138314 >seq2646 Length=128401 Score = 107 bits (118), Expect = 3e-18 Identities = 137/189 (72%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 32657 GGATATGCAACACAAGTGAGCACAAACCCTTCTTCAATTTGATCATCATCCAAGAACGAC 32716 || || | |||||||||||||| | | |||| || ||||||| ||||| | ||| || Sbjct 24184 GGGTAAGAAACACAAGTGAGCAAATAACCTTTCTCCATTTGATTGTCATCAAGGAAGGAT 24125 Query 32717 TGATCACTTTGGTCTACTGTACCAGATACAATCTTACCTGCACAAGATGAACAGGCACCT 32776 ||| || || ||||| ||| ||||| || ||| ||||| | ||| ||||||||| Sbjct 24124 CCATCGGACTGATCAACTGTTCCACTTACAAGCTGACCAGCACAGGTTGAGCAGGCACCT 24065 Query 32777 GCACGACAAGAGTAGTTTAAATCAACCCCACCTTCCTCTGCTGCATCAAGGATGTATTGA 32836 || | || ||||| || |||||||| || || |||||||| |||||||| | Sbjct 24064 GCCCTGCATGAGTAAGGCAAGTCAACCCCTTTGTCTTCAGCTGCATCGAGGATGTAAGTA 24005 Query 32837 TCATCAGCA 32845 ||||| ||| Sbjct 24004 TCATCCGCA 23996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665469335817160