Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq781 123 3e-23 seq558 116 4e-21 seq403 95.1 1e-14 >seq781 Length=476855 Score = 123 bits (136), Expect = 3e-23 Identities = 282/421 (67%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| ||||||| ||||| || |||| || || | | || ||| ||| ||||| Sbjct 28383 GAGGTTGTGGAATTTCTGAAAAAACCTGAAAGGTTTACTGCTGTTGGAGCCCGCATCCCT 28442 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | || || | || |||||| ||||||||||| || || || || || Sbjct 28443 AAGGGTGTTCTGCTTGTTGGCCCGCCAGGGACGGGAAAGACTCTACTGGCTAAGGCTATT 28502 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || || ||| | ||| || || || || | |||| || | ||||| || |||| Sbjct 28503 GCTGGAGAAGCTGGTGTTCCTTTTTTCTCCATT--TCTGGGTCAGAGTTTGTTGAAATGT 28560 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 ||||||||||||| || | || |||||||| || | | || |||||| | Sbjct 28561 TTGTTGGTGTGGGAGCATCTCGAGTGCGCGATCTTTTCAAGAAGGCAAAAGAAAATGCTC 28620 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | || ||||| || ||||||| |||||||| || || | |||| || | | ||| | Sbjct 28621 CTTGCATTGTGTTTGTTGATGAAATTGATGCAGTAGGAAGGCAA---AGAGGTACTGGAA 28677 Query 175529 T---GCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 | | || |||||| || || ||||| ||| | ||||| || || || |||||||||| Sbjct 28678 TCGGGGGAGGAAATGATGAAAGGGAACAGACATTGAATCAGCTTCTAACTGAGATGGATG 28737 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 ||||||| | | ||||| || | ||| |||| || ||||| | | || || |||| Sbjct 28738 GCTTTGAGGGTAACACTGGTATCATTGTTGTTGCTGCAACTAACAGGGCAGACATTCTTG 28797 Query 175646 A 175646 | Sbjct 28798 A 28798 >seq558 Length=1338247 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186 ||||||| ||| | || || ||||||| | ||||||||||||| || | ||||| | Sbjct 393119 CGGGACTTTGACTATGATTTCTTTGGTTTTAAAACCCTTGAGA-GATCATATCTCCTGAA 393061 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||| | || ||| ||||||| ||| |||| || | || || Sbjct 393060 GGTCCAAGGGACAGTTGTGGAGAGACCTCAGCACATGTTGATGAGGGTTGCTGTTGGGAT 393001 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 |||| ||| || ||||| || | | | |||||||| || |||||||||| | ||| Sbjct 393000 CCACAAGGATGATATTGAGTCGGCCATCAAGACATACCACTTGATGTCCCAAAGGTGGTT 392941 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || || | ||||| ||||||||||| || |||||||| || || Sbjct 392940 CACCCATGCTTCTCCAACTCTCTTCAATGCCGGCACACCAAGGCCTCA 392893 >seq403 Length=521970 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/201 (71%), Gaps = 12/201 (6%) Strand=Plus/Minus Query 175396 TTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCC 175455 ||||||||| |||||||||||||||| || ||||| | ||| | ||||| | Sbjct 212438 TTTGTGGAGCTGTTTGTTGGTGTGGGAGCTTCCAGGGTGAGGGATTTGTTTGA----GAA 212383 Query 175456 CGCGAAAATCAA----CCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCA 175511 ||||| | || || || ||||| || ||||||||||||||||| || || | ||| Sbjct 212382 GGCGAAGAGTAAGGCTCCTTGCATTGTGTTTATTGATGAGATTGATGCTGTTGGGAGGCA 212323 Query 175512 ACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTA 175569 | | | || || ||| | | | |||||| ||||| ||||| || || ||||| | Sbjct 212322 AAGAGGAGCAGGAATGGGAGG--TGGAAATGATGAGAGGGAACAGACTATCAATCAGTTG 212265 Query 175570 CTCACCGAGATGGATGGCTTT 175590 | || ||||||||||| ||| Sbjct 212264 TTGACTGAGATGGATGGGTTT 212244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596547131697440