Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq1325 471 5e-128 seq1658 403 2e-107 >seq1325 Length=385796 Score = 471 bits (522), Expect = 5e-128 Identities = 688/965 (71%), Gaps = 7/965 (1%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| |||| |||||||| || ||||| | ||||||||||||||||||||| ||||| Sbjct 7966 GCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 7907 Query 7951 GCTCTGTTTAAT-ACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGA 8009 || || ||||| | ||| |||| ||| |||| | ||| | | |||||| || || Sbjct 7906 GCA-TGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACAGA 7848 Query 8010 TTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAA 8069 |||||| || || || || || | ||| || ||||| || | |||||| | || ||| || Sbjct 7847 TTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTAAA 7788 Query 8070 CCAAACACATACAACTGGGAATGTAGCGAGGAAGAAG-TGAAGACTTCTACTGTTGTT-A 8127 ||||| || ||| || || | | ||| | ||||||| | |||| | | |||||| | Sbjct 7787 CCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGGTAAAGAA--CGAGAGTTGTTGA 7730 Query 8128 AACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAG 8187 ||| | ||||| || ||||| |||| || || || ||||||||||| ||||||||||| Sbjct 7729 AACTA-GCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAA 7671 Query 8188 GTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCT 8247 || ||||| ||||| | || | ||||| | || ||| || | || || || || Sbjct 7670 GTTTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCC 7611 Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || ||||| ||||||||||| | || || || ||||| Sbjct 7610 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAAC 7551 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| | || ||||||||||| ||||| ||||| || |||||| Sbjct 7550 ACACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAAT 7491 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||| ||||| || |||| ||| || ||||||||||| |||||||| || || Sbjct 7490 ACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCT 7431 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||||| | | || | ||||| || | ||| || | || ||||| |||||| Sbjct 7430 TGACCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGCA 7371 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAA 8547 ||| ||||| || | |||||| | ||| | | ||||||| | |||||| ||| Sbjct 7370 ACATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAA 7311 Query 8548 GCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAAC 8607 | | |||| | |||| | | || | | ||| ||||||||||| || ||| Sbjct 7310 CATGCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAAC 7251 Query 8608 CACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAA 8667 |||||||| | | || |||||||| || ||||| ||||| || || ||||| ||| Sbjct 7250 CACTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAA 7191 Query 8668 GATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGT 8727 | |||| | ||||| || || || |||||||| || | | || || | |||| || Sbjct 7190 GTAGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAGT 7131 Query 8728 TCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTA 8787 ||||||||||| || ||||| || | ||||||||||| || || | ||||| || | Sbjct 7130 TCACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACAGAA 7071 Query 8788 GCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTG 8847 | |||| || ||| || ||||| | ||| |||||||| || | |||||| ||||| Sbjct 7070 GTTGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTTT 7011 Query 8848 TTTGT 8852 || || Sbjct 7010 TTAGT 7006 >seq1658 Length=355568 Score = 403 bits (446), Expect = 2e-107 Identities = 680/983 (69%), Gaps = 10/983 (1%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 186934 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 186993 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | | |||||| || ||| Sbjct 186994 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 187053 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || | ||| || ||||| || | |||||| | || | | ||| Sbjct 187054 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAATAAAC 187113 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAA 8129 |||| || ||| || || | | ||| | ||||||||| | | | | || ||| ||| Sbjct 187114 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTTGAAA 187173 Query 8130 CGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGT 8189 | | | ||| || ||||| |||| | || || ||||||||||| ||||||||||| || Sbjct 187174 CTA-GTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATAAGT 187232 Query 8190 CTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCT 8249 ||||| ||||| || || | ||||| | || ||| || | ||| || || || || Sbjct 187233 TTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 187292 Query 8250 GATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACA- 8308 || | | ||| | || || ||||| ||||||||||| | || || | ||||| | Sbjct 187293 AATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTAGAAAGAGAGCGGCCGAATAC 187352 Query 8309 -------TACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCT 8361 ||| ||||| ||| ||| || || ||||||||||| ||||| ||||| || Sbjct 187353 ACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 187412 Query 8362 TGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAAT 8421 | |||||| | ||| ||||| || |||||||| || |||||||||| |||||| | ||| Sbjct 187413 TAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAT 187472 Query 8422 GAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTA 8481 || ||||||| ||| || | ||||| || || ||| || | | |||| | Sbjct 187473 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGCTAAA 187532 Query 8482 TATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCC 8541 ||||| ||| ||||| || | |||||||| ||| | | ||||||| | |||| Sbjct 187533 TATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGACCC 187592 Query 8542 ATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTA 8601 || ||| | | |||| | ||||| | | || | | ||| ||||| ||||| Sbjct 187593 ATATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTG 187652 Query 8602 TACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCG 8661 || ||||||||||| | || ||||| || || ||||| ||||| || || | | | Sbjct 187653 TATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTACAACT 187712 Query 8662 TTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCA 8721 ||| |||| | | ||| || || || || ||||| || | | || || | | Sbjct 187713 GCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACCCGGAA 187772 Query 8722 ACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAG 8781 ||||||||||||||||| || ||||| | | ||||||||||| || || | ||||| Sbjct 187773 ACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAATAAAT 187832 Query 8782 CAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGT 8841 || || |||| || ||| ||| ||||| | ||| |||||||| || | |||||| Sbjct 187833 ACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATATAAAGA 187892 Query 8842 CTGTTGTTTGTACTTGTAACCCA 8864 | ||| | || || || | ||| Sbjct 187893 CGGTTTTCAGTGCTAGTTATCCA 187915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615839205082360