Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq1325 515 4e-141 seq1658 488 6e-133 seq2002 462 2e-125 seq2892 95.1 1e-14 seq2515 95.1 1e-14 seq2433 82.4 9e-11 >seq1325 Length=385796 Score = 515 bits (570), Expect = 4e-141 Identities = 712/990 (72%), Gaps = 5/990 (1%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | | | | |||| ||| || ||| |||| ||| | || ||||||||| | Sbjct 6984 CTTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTT 7043 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTC 165886 |||||| ||||| | ||| | |||||| |||| || || | |||||||| ||||||| Sbjct 7044 GATGATCCCAACCTTATTGACTGCAACT-TCTGTATTTATTTTAGCCTTCATTGCTGCTC 7102 Query 165887 CCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACA 165946 | | || || || || || || ||||||| || | || ||||| | || || |||| Sbjct 7103 CTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACA 7162 Query 165947 ACATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCA 166006 | || || || ||||| || |||| |||| || || || | ||||| ||||| | Sbjct 7163 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 7222 Query 166007 TCTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTG 166066 | |||||||| || ||| |||| || ||| | || ||||| ||||||| |||| ||| Sbjct 7223 TATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTG 7282 Query 166067 TCTTCCACTTCCTGATTGGCATCT-ATGCCTACATGGGTCGTGAGTGGGAACTGTCTTAC 166125 | | |||| | |||| | ||| || |||||||||||||||||||| || | Sbjct 7283 TTCTAAACTTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTC 7341 Query 166126 CGTCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGT 166185 ||||| |||||||| || ||||| |||||| || ||||| || || || || || | | Sbjct 7342 CGTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACT 7401 Query 166186 GCAGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGA 166245 | || ||| | | || | | |||||||| || || ||||||| ||||| || ||| Sbjct 7402 GTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGA 7461 Query 166246 ATCTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCAT 166305 ||||| | || ||||||| ||| | || ||||| ||||||||||| || || |||||| Sbjct 7462 ATCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCAT 7521 Query 166306 CCCTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 || || | ||| | || || ||||| || || | ||| | | | |||||||||||| Sbjct 7522 CCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCAT 7581 Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425 || ||||| |||||| | | | || || || || ||| ||||| || | Sbjct 7582 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAG 7641 Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 ||||||| ||| | ||||| |||||||| || || || ||||| ||||||||||| ||| Sbjct 7642 GGTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 7701 Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 166545 || || |||||||| ||||| ||| ||||||||||| || || || | ||||||| | Sbjct 7702 GGCCGATTGATCTTTCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTA 7760 Query 166546 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 166605 ||||| |||||||| || || || ||||| || || | || | || ||||| ||| Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 166665 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 166666 ACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAAC 166725 || ||||| ||| | |||||| ||| | |||||||||||||||||||| ||||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 166726 GCACACAACTTCCCCCTCGACCTCGCTGCT 166755 || || |||||||| | ||||| || ||| Sbjct 7941 GCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 488 bits (540), Expect = 6e-133 Identities = 706/990 (71%), Gaps = 16/990 (2%) Strand=Plus/Minus Query 165778 TGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCTGATGATTCCA 165837 ||| | || ||||| | |||||||| ||| | || ||||||||| ||||||| || Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 165838 ACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCATCGCTGCTCCCCCTGTGGA 165896 || | ||| | |||||| |||| || || | |||||||| |||||||| | | || Sbjct 187855 ACCTTATTGACTGCAACT-TCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGA 187797 Query 165897 CATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAACATCATCTC 165956 || || || || |||||||| || | || ||||| | || || || || || || || Sbjct 187796 TATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTC 187737 Query 165957 TGGTGCAGTTGTTCC--CTCTTCCAACGCAATTGGTCTACACTTCTATCCCATCTGGGAA 166014 ||| | || |||| || || || | | || | ||||| ||||| || || ||| Sbjct 187736 GGGTACCATTATTCCTACTTTTGCA--GTTGTAGGGTTGCACTTTTATCCAATATGAGAA 187679 Query 166015 GCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGTCTTCCAC 166074 || || | | |||| || ||| | || ||||||||||||| |||| |||| | ||| Sbjct 187678 GCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACAC 187619 Query 166075 TTCCTGATTGGCATCT-ATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTAGG 166133 || | |||| | ||| || |||||||||||||||||||| || ||||||||| Sbjct 187618 TTTTTACTTGGTGTAGCATGT-TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGG 187560 Query 166134 TATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGCAGTATT 166193 |||||| || ||||| |||||| || | ||| | | || || || | ||| || || Sbjct 187559 TATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTT 187500 Query 166194 CCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAATCTCAGG 166253 | | | || || | |||||||| || || | ||||| ||||| || | |||||| || Sbjct 187499 CTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGG 187440 Query 166254 AACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCCCTTCCA 166313 || ||||||| ||| | || ||| | ||||||||||| || || |||||||| || || Sbjct 187439 TACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCA 187380 Query 166314 TATGCTCGGCGTTGCTGGGG--------TATTTGGTGGCAGTTTGTTTAGTGCTATGCAC 166365 ||| | || || ||||| | |||| || || | | | |||||||||||| Sbjct 187379 CATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGCAT 187320 Query 166366 GGAAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTAC 166425 || ||||| | |||| | | |||| || || || |||| ||||| || | Sbjct 187319 GGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAG 187260 Query 166426 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 166485 ||||||| ||||| ||||| |||||||| || || || ||||| ||||||||||| ||| Sbjct 187259 GGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTC 187200 Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 166545 | || |||||||| ||||| || |||||| |||| || || || ||||||||| | Sbjct 187199 GCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTA 187140 Query 166546 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCATTC 166605 ||||| |||||||| || || || ||||| | || | || | || ||||| ||| Sbjct 187139 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTC 187080 Query 166606 AACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAAC 166665 ||| | || |||||||| |||||||| || | ||||| |||| |||||||| | || Sbjct 187079 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAAT 187020 Query 166666 ACCTGGGCAGATGTTCTTAACCGCGCTGGTCTCGGTATGGAAGTTATGCATGAGCGTAAC 166725 || ||||| ||| | ||||||| ||| || |||||||||||||||||||| ||||| Sbjct 187019 ACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAAT 186960 Query 166726 GCACACAACTTCCCCCTCGACCTCGCTGCT 166755 || || |||||||| || ||||| || ||| Sbjct 186959 GCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 >seq2002 Length=1023113 Score = 462 bits (512), Expect = 2e-125 Identities = 713/1009 (71%), Gaps = 9/1009 (1%) Strand=Plus/Plus Query 167026 GATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 167085 ||||||||| | ||||| ||||| |||||||| || |||||||| || | || ||| Sbjct 167440 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCTGGGCTATTGCTCTTT 167499 Query 167086 CCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 167145 | ||||||| | || | || |||||| |||| || || || || || || ||| Sbjct 167500 CGTG-TGCTTATTTCGCCTTAGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 167558 Query 167146 TATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTCTTA-CTGCGGCA 167202 ||||| |||||| | || || | |||| | || ||| || ||||||| | ||| || Sbjct 167559 TATACCCATGGATTGGCCAGTTC--TTATTTGGAAGGTTGCAA-TTTCTTAACCGCGACA 167615 Query 167203 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGGGTCCTGAATCT 167262 ||| |||||| || || | | | || |||||| | | || |||||||| ||| | Sbjct 167616 GTTTCTACTCCTGCTAATAGTTTAGCCCACTCTTTATTGTTACTGTGGGGTCCCGAAGCA 167675 Query 167263 CAAGGGGA-TTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCA 167321 ||||| || ||| || | ||| ||| | || || || ||| ||||||| || || || Sbjct 167676 CAAGGAGACTTTACTC-GTTGGTGTCAATTAGGCGGCCTGTGGACTTTTGTTGCTCTTCA 167734 Query 167322 CGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTCGCCTGATTGG 167381 || || || || || || ||||| ||| | || || || || |||||||| || Sbjct 167735 TGGTGCTTTCGCACTTATAGGTTTTATGTTACGTCAATTCGAGCTTGCTCGATCCGTTCA 167794 Query 167382 TATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTT 167441 | || || || ||||| || || || |||||||| |||||||| || ||| || || Sbjct 167795 ATTGCGCCCTTATAATGCAATCGCATTATCTGGTCCAATTGCTGTTTTTGTTTCTGTATT 167854 Query 167442 CCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGC 167501 ||| | ||||| || ||||| | ||||||||||| || || || | || || Sbjct 167855 CCTAATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCACCTAGTTTTGGTATAGCAGC 167914 Query 167502 CATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGAATCCATTTCA 167561 || || |||||| | ||||| | ||||| || || || |||||||||||||||||||| Sbjct 167915 TATATTTCGATTCATTCTCTTTTTTCAAGGGTTTCATAATTGGACACTGAATCCATTTCA 167974 Query 167562 TATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTAC 167621 ||||||||| || || ||| | |||| | || | || | || || ||||| | ||| Sbjct 167975 TATGATGGGAGTTGCCGGTGTATTGGGCGCCGCTCTACTATGCGCTATTCATGGCGCTAC 168034 Query 167622 AGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTC 167681 ||||| |||| ||| | |||||| ||||| ||||| || || ||| || | | Sbjct 168035 CGTAGAAAATAATTTATTTGAAGACGGTGATGGGGCAAATACATTCCGGGCTTTTAACCC 168094 Query 167682 TACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTT 167741 || || | ||||| |||||||||||||| || || ||||| || ||||| || || || Sbjct 168095 AACCCAAGCCGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATTTT 168154 Query 167742 CGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCCGTTAT 167801 ||| ||||||| ||| ||| | ||| | ||||||||||||||||| || || || | Sbjct 168155 TGGCGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAAC 168214 Query 167802 GGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCTTACGA 167861 || | |||| | |||| | | ||| ||||| | || || ||||| || || Sbjct 168215 CGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTATGGCTTTGAACCTACGTGCCTATGA 168274 Query 167862 TTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCTATACTAA 167921 ||| |||| || || ||| | || ||||| ||||| || |||||||||||||| || || Sbjct 168275 CTTCATTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAAACTTTCTACACCAA 168334 Query 167922 AAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATCAACCTCATGA 167981 ||| || || | || |||||| |||| || ||| | || || ||||| |||||||| Sbjct 168335 AAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGA 168394 Query 167982 GAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 ||| || | ||||| ||||| ||||| || || || ||||| || ||| Sbjct 168395 AAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA 168443 >seq2892 Length=679138 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 577639 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 577580 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 577579 GGTTCGAATCCTACTTGGGGAG 577558 >seq2515 Length=817576 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 18119 CTCCCTTCATTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTA 18178 ||||| | |||||||||||||||| || ||||| ||| ||||||| ||||||||||| Sbjct 692199 CTCCCGTTGTTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGATTGGTCGTA 692140 Query 18179 GGTTCAAATCCTACCTGGGGAG 18200 ||||| |||||||| ||||||| Sbjct 692139 GGTTCGAATCCTACTTGGGGAG 692118 >seq2433 Length=182693 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 18128 TTCCTCAGTAGCTCAGCGGCAGAGCCATCGACTGTTAATCGATTGGTCGTAGGTTCAAAT 18187 |||||||||||||||| || ||||| ||| ||||||| || ||||| ||||||||||| Sbjct 105642 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCATAGGTTCAAAT 105583 Query 18188 CCTACCTGGGGAG 18200 ||||| | ||||| Sbjct 105582 CCTACTTTGGGAG 105570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561226861997200