Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq1325 403 5e-108 seq1658 396 8e-106 >seq1325 Length=385796 Score = 403 bits (446), Expect = 5e-108 Identities = 672/966 (70%), Gaps = 9/966 (1%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||||| ||| |||||||| | |||||||| || || | ||||| || ||| ||| | Sbjct 7006 ACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCAA-CCTTATTGAC 7064 Query 41315 GCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGA 41371 | |||||| | |||||| | ||||| ||| || || | || || || ||||| Sbjct 7065 --TGCAACTTCTGTATTTATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGT 7122 Query 41372 ATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTC 41431 || || |||| || | || || || | || || ||||| || || || || ||| | Sbjct 7123 ATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATT 7182 Query 41432 GTTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTT 41491 |||| | | || || || | ||||| || ||||| |||||||| || | || Sbjct 7183 ATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTT 7242 Query 41492 GATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGC 41551 ||||| ||| | |||||||| ||||| | |||| | || | |||| | |||| Sbjct 7243 GATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGT 7302 Query 41552 GTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGG 41611 || ||| ||||| || |||||||||||||| | || || || ||| | || ||| Sbjct 7303 GTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGG 7362 Query 41612 ATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCG 41671 || |||||| || || ||||| || || || || |||| ||| ||| | | || | Sbjct 7363 ATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTA 7422 Query 41672 TTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTAC 41731 |||| || || |||||||||| |||||| | || || || | || ||||||| Sbjct 7423 ATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTT 7482 Query 41732 ATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTG 41791 ||| | || ||||||||||||||||| || ||||||||||| |||| |||| | ||||| Sbjct 7483 ATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTA 7542 Query 41792 GCCGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCA 41851 || || || || | || | | | ||||||||| ||| | |||| || || Sbjct 7543 GCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 7602 Query 41852 CTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAG 41911 | || | || || || || | | || || | ||||||| || | |||||| Sbjct 7603 TTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAG 7662 Query 41912 GAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATAT 41971 ||||| ||||| |||||||| |||||||| || ||||| || || | ||||| |||||| Sbjct 7663 GAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATAT 7722 Query 41972 GCTAGCTTTAATAATTCCCGTAGTCTTCA-TTTCTTTCTTGCTGCCTGGCCTGTTGTAGG 42030 ||||| || || || || ||| |||| | ||||| | ||||| |||||||| ||||| Sbjct 7723 GCTAGTTTCAACAACTCTCGT--TCTTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAGG 7780 Query 42031 TATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTT 42090 |||||||||| |||| | || | ||| ||||| |||||||| ||||||||||| || Sbjct 7781 TATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTT 7840 Query 42091 TAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAA 42150 ||||||||| | | | | | | || | || || | || |||||||| || |||| Sbjct 7841 CAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAA 7900 Query 42151 CCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGA 42210 || ||| ||| |||| | || || |||||||| || || || || |||||||| | || Sbjct 7901 CCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGA 7960 Query 42211 CCTTGC 42216 ||| || Sbjct 7961 CCTAGC 7966 >seq1658 Length=355568 Score = 396 bits (438), Expect = 8e-106 Identities = 679/979 (69%), Gaps = 26/979 (3%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTGCC 41314 ||| | |||||||||||| | |||||||| || || | ||||| || | ||| ||| | Sbjct 187903 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 187845 Query 41315 GCTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGA 41371 | |||||| | |||||||| ||||| ||| || || | | || || ||||| Sbjct 187844 --TGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGATATTGATGGT 187787 Query 41372 ATCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTC 41431 || || ||||| || | || || || | || || || || || || || || || | Sbjct 187786 ATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCGGGTACCATT 187727 Query 41432 GTTCCGA-----GCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTA 41486 |||| | ||||| || | || | ||||| || ||||| || ||||| || Sbjct 187726 ATTCCTACTTTTGCAGT--TG---TAGGGTTGCACTTTTATCCAATATGAGAAGCGGCGT 187672 Query 41487 CACTTGATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCA 41546 ||||||| ||| | |||||||| ||||| | |||| | || | ||||| | Sbjct 187671 TGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACTTTTTAC 187612 Query 41547 TTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGC 41606 |||| || ||| ||||| || |||||||||||||| | || ||||| ||| | | Sbjct 187611 TTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGCC 187552 Query 41607 CCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTT 41666 | ||||| ||||||| || | |||| | || || || |||||||| ||| | | | Sbjct 187551 CTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTTTTCTTGATCT 187492 Query 41667 ATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCA 41726 | || |||| || || |||| ||||| |||||| | | || || || || |||| Sbjct 187491 ACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCTGGTACTTTCA 187432 Query 41727 ACTACATGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGG 41786 ||| ||| | || ||| ||||||||||||| || ||||||||||| ||||||||| | | Sbjct 187431 ACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 187372 Query 41787 GTGTGGCCGGCG--------TATTTGGTGGGAGTTTGTTCTC-TGCTATGCACGGTAGCC 41837 |||| || || | |||| || | | | |||| ||||||||| ||| | Sbjct 187371 GTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCT-TTCTAGTGCTATGCATGGTTCCT 187313 Query 41838 TGGTCACGTCGTCACTCATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACA 41897 |||| | || | ||| | || || || ||| | | || || | ||||||| Sbjct 187312 TGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATGAGGGTTACA 187253 Query 41898 AGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGC 41957 || || ||||||||||| ||||| |||||||| |||||||| || ||||| | || Sbjct 187252 GATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCGCCCGAT 187193 Query 41958 TTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCT 42017 | ||||| |||||| |||| || || | || ||| | | || ||||| | ||||| | Sbjct 187192 TGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCTTAGCTGCTT 187133 Query 42018 GGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGA 42077 ||||||| ||||||||||||||| ||| | || | ||| ||||| |||||||| | Sbjct 187132 GGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCTTCAACTTAA 187073 Query 42078 ATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGG 42137 |||||||||| || ||||||||| | | | | | | || | || || || || |||| Sbjct 187072 ATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACTTGGG 187013 Query 42138 CTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACA 42197 |||| || |||||||||| |||||||| | || || |||||||| || || || || | Sbjct 187012 CTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATA 186953 Query 42198 ACTTCCCGCTTGACCTTGC 42216 ||||||| || ||||| || Sbjct 186952 ACTTCCCTCTAGACCTAGC 186934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146209168540152