Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq1325 455 9e-124 seq1658 426 4e-115 >seq1325 Length=385796 Score = 455 bits (504), Expect = 9e-124 Identities = 691/974 (71%), Gaps = 7/974 (1%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 || ||||||| | | || ||||| ||| |||||||| |||| ||||||||||| || Sbjct 6985 TTCTGTAACTTGATAACCAACACTAAAAACAGTCTTTATATTGGATGGTTTGGTGTTTTG 7044 Query 42349 ATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCC 42406 ||||| ||| || | | |||| || | ||| |||||| | || ||||||||||| | Sbjct 7045 ATGAT-CCCAACCTTATTGACTGCAACTTC-TGTATTTATTTTAGCCTTCATTGCTGCTC 7102 Query 42407 CTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACA 42466 ||| ||||| |||||||| |||||||||| ||| || || ||||| || || || |||| Sbjct 7103 CTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCCGGGTCTCTACTTTACGGAAACA 7162 Query 42467 ACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGA 42526 | || || || |||||| | | |||| | || || || | || || ||| | | Sbjct 7163 ATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGGTTGCACTTTTATCCAA 7222 Query 42527 TCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCG 42586 | |||||||| | |||| || ||| | ||||| || || |||||| | || | | Sbjct 7223 TATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAACGGAGGTCCTTATGAACTAATTG 7282 Query 42587 TGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACC 42646 | | |||| | | ||| | | ||| |||| || || ||||||||| | || Sbjct 7283 TTCTAAACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 7342 Query 42647 GACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTG 42706 | || || ||| | || ||||| |||||| || || || || || || || || |||| Sbjct 7343 GTCTGGGTATGCGCCCTTGGATTGATGTTGCATATTCAGCTCCGGTTGCAGCGGCTACTG 7402 Query 42707 CAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCA 42766 || ||| | |||| | | |||| ||||| ||||| ||||| |||||||| || | Sbjct 7403 TTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGCTTTTCTGATGGTATGCCTCTAGGAA 7462 Query 42767 TTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATC 42826 | || |||| |||||||| ||| | || ||||||||||| || ||||| |||||||||| Sbjct 7463 TCTCTAGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCATC 7522 Query 42827 CTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGCTATGCATG 42886 | || | ||| | ||||| || || || || | || || | | |||||||||| Sbjct 7523 CATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAAGGCTCTCTTTATAGTGCTATGCATG 7582 Query 42887 GTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAATTATG 42946 || | || || ||| | | | | ||||| || |||| ||| ||| | | Sbjct 7583 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACATAAAATGAATCTGCTAATGAGG 7642 Query 42947 GCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTACTTTG 43006 | |||| ||| | |||||||| || |||||||| ||||| || || |||||||| || | Sbjct 7643 GTTACAGATTCAGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATTTCG 7702 Query 43007 GACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTT 43065 | || | ||||| |||||||| | |||| || || ||| ||||| | |||||| | Sbjct 7703 GCCGATTGATCTTTCAATATGC-TAGTTTCAACAACTCTCGTTCTTTAC-CTTCTTCTTA 7760 Query 43066 GCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCGTTT 43125 || |||||||| || || || |||||||| ||| || | || | ||||||||||| || Sbjct 7761 GCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCCTTC 7820 Query 43126 AACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATCCCT 43185 ||||| |||||||| || || |||||||| | ||||||| ||| || ||| || | | Sbjct 7821 AACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTCAT 7880 Query 43186 ACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAAT 43245 |||||||||||||| | || | ||| ||| |||| | || || ||||| || || ||| Sbjct 7881 ACTTGGGCTGATATCATTAACCATGCTAACTTTGGTATGGAAGTTATGCATGAACGTAAT 7940 Query 43246 GCACATAACTTCCC 43259 || ||||||||||| Sbjct 7941 GCTCATAACTTCCC 7954 >seq1658 Length=355568 Score = 426 bits (472), Expect = 4e-115 Identities = 696/990 (70%), Gaps = 22/990 (2%) Strand=Plus/Minus Query 42297 CTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCC 42356 |||| | ||| ||| | |||||||||||| |||| ||||||||||| ||||||| || Sbjct 187916 CTGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGAT-CC 187858 Query 42357 CTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTA 42414 || || | | |||| || | ||| |||||| | || ||||||||||| |||| || Sbjct 187857 CTACCTTATTGACTGCAACTTC-TGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTA 187799 Query 42415 GACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATC 42474 || |||||||| |||||||||||||| || || ||||| || || || || || || || Sbjct 187798 GATATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATT 187739 Query 42475 TCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGAC---TACATTTGTATTCGATCTGG 42531 || ||| || | | |||| | ||| ||| | | || || ||| | || || Sbjct 187738 TCGGGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGA 187682 Query 42532 GAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCGTGTTC 42591 ||||| |||| || ||| | ||||| || || |||||| | || | || | Sbjct 187681 GAAGCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 187622 Query 42592 CACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACTTTCGTACCGACTT 42651 ||||| | | ||| | | ||| |||| || || ||||||||| | ||| || Sbjct 187621 CACTTTTTACTTGGTGTAGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTA 187562 Query 42652 GGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTC 42711 || ||| | || ||||| ||||||| || | || | | || || || ||||| || Sbjct 187561 GGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTT 187502 Query 42712 TTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCC 42771 ||| | |||| ||| |||| ||||| |||| ||||| |||||||| | || || Sbjct 187501 TTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCT 187442 Query 42772 GGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCTTATGCATCCTTTC 42831 ||||| |||||||| ||| | || ||| ||||||| || ||||| ||||||||||| || Sbjct 187441 GGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTT 187382 Query 42832 CATATGCTTGGTGTTGCCGGCGTATTTGGTG-----GGTCGTTGT---TCTCA-GCTATG 42882 || ||| | ||||| || || | | ||||| || || | | ||| |||||| Sbjct 187381 CACATGTTAGGTGTAGCTGGTG-ACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATG 187323 Query 42883 CATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCAAAAT 42942 |||||| | || | ||| | | | | ||||| || ||||| ||| ||| Sbjct 187322 CATGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAAT 187263 Query 42943 TATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGTTAC 43002 | || |||| ||||| |||||||| || |||||||| ||||| || || |||||||| Sbjct 187262 GAGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTAT 187203 Query 43003 TTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTT 43061 || | || | ||||| |||||| | | |||| || | ||| ||||| |||||||| Sbjct 187202 TTCGCCCGATTGATCTTTCAATATAC-TAGTTTCAACTACTCTCGTTCTTTACACTTCTT 187144 Query 43062 TCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGC 43121 | || |||||||| || || || |||||||| | | || | || | ||||||||||| Sbjct 187143 CTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGC 187084 Query 43122 GTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCAT 43181 || ||||| |||||||| || || |||||||| | ||||||| ||| || ||| || Sbjct 187083 CTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAAT 187024 Query 43182 CCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCG 43241 ||||||||||||||| | || ||||| |||||||| | || || ||||| || || Sbjct 187023 TAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACG 186964 Query 43242 GAATGCACATAACTTCCCGCTTGATCTTGC 43271 ||||| ||||||||||| || || || || Sbjct 186963 TAATGCTCATAACTTCCCTCTAGACCTAGC 186934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143527664486124