Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq1325 414 3e-111 seq1658 401 2e-107 >seq1325 Length=385796 Score = 414 bits (458), Expect = 3e-111 Identities = 672/963 (70%), Gaps = 3/963 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| | || ||||||||||||||||| || ||||||||||| | || | |||| Sbjct 7966 GCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAAGTTA 7907 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || |||| | | ||||||||| ||| | |||| || | | ||| ||||| || Sbjct 7906 GCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACAGAT 7847 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| || | ||||| | || || | | Sbjct 7846 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTAAAC 7787 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || |||||| ||| || ||| Sbjct 7786 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGGTAA-AGAACGAGAGTTGTTGAAA 7728 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| ||||| || |||| || || || || || ||||| ||||||||||| || Sbjct 7727 CTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAAGTT 7668 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||||| || | || || | ||| || | | | ||| ||||| Sbjct 7667 TCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCCCTG 7608 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| |||||| || |||| || Sbjct 7607 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAACACA 7548 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| | ||||| ||||| || || || || || || |||||||| Sbjct 7547 CCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATACA 7488 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| ||||||| |||||| || |||||||| |||||| ||| || ||||| Sbjct 7487 ATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTGA 7428 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | | || | ||||| || | ||| || | | || |||| |||||||||| Sbjct 7427 CCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGCAACA 7368 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || ||| | Sbjct 7367 TCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAT 7308 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| |||| | | ||| |||| ||| || || || ||||||| |||| Sbjct 7307 GCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAACCAC 7248 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | | |||||||| || || ||||| || | || || || ||| | Sbjct 7247 TCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGTA 7188 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || |||||||||||||| | || || |||||||| | ||| Sbjct 7187 GGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAGTTCA 7128 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGT 26775 || || ||||| |||||||| | || || || |||||||| | ||||| ||| | ||| Sbjct 7127 CGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACA-GAAGT 7069 Query 26776 GGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTC 26835 || | | |||| || ||||| | || || |||||||| | ||| |||| ||| | Sbjct 7068 TGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTTTTT 7009 Query 26836 AGT 26838 ||| Sbjct 7008 AGT 7006 >seq1658 Length=355568 Score = 401 bits (444), Expect = 2e-107 Identities = 683/985 (69%), Gaps = 14/985 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 186934 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 186993 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 186994 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 187053 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||| ||| || ||||| || | ||||| | || | | | Sbjct 187054 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAATAAAC 187113 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | ||||| || | |||||| || || ||| Sbjct 187114 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTTGAAA 187173 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || | ||| ||||| || |||| | || || || || ||||| ||||||||||| || Sbjct 187174 CTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATAAGTT 187233 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| |||||||| || | || || | ||| || | | ||||| ||||| | Sbjct 187234 TCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTCCCTA 187293 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAA-- 26294 || | ||| | ||||| || ||||||||| |||||| | ||||| | Sbjct 187294 ATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTAGAAAGAGAGCGGCCGAATACA 187353 Query 26295 ------CCCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTT 26348 | ||||| ||||| ||| || ||||| ||||| || || || || || || | Sbjct 187354 CCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCCT 187413 Query 26349 GGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAAC 26408 |||||| | ||||||||| |||||||||||||| | |||||||| |||||| ||| | Sbjct 187414 AGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAATC 187473 Query 26409 TCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTAT 26468 | ||||| || | || || | ||||| || || ||| || | | | ||| || Sbjct 187474 TTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCAGAGCTAAAT 187533 Query 26469 ATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTG 26528 ||||||||| ||||| || | ||| ||||| | | || |||||||||| | || Sbjct 187534 ATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGACCCA 187593 Query 26529 CATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGT 26588 ||| |||||| || | ||| ||||| | | ||| |||| ||| || || || |||| Sbjct 187594 TATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTTGT 187653 Query 26589 ATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGC-G 26647 ||| |||||| || | | ||||| || || || ||||| || | || | | | Sbjct 187654 ATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTACAACTG 187713 Query 26648 TTAGAGGAGGGGACGACTGCT-CCTGATATTATATTGTTTCCGTACATTAACGAGCCGGA 26706 | || | ||| | || | || || || ||||| |||||||| | || || ||||| Sbjct 187714 CAAAAGTA--GGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACCCGGA 187771 Query 26707 AACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 ||| || ||||| || ||||| ||||||| | || || || |||||||| | ||||| Sbjct 187772 AACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAATAAA 187831 Query 26767 -ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGA 26825 ||| | ||| || | | |||| || ||||| | || || |||||||| | ||| | Sbjct 187832 TACA-GAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATATAAA 187890 Query 26826 GACGGTTCTCAGTACTTGTAACCCA 26850 ||||||| ||||| || || | ||| Sbjct 187891 GACGGTTTTCAGTGCTAGTTATCCA 187915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147706714956960