Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq1325 506 2e-138 seq1658 457 1e-123 >seq1325 Length=385796 Score = 506 bits (560), Expect = 2e-138 Identities = 690/958 (72%), Gaps = 15/958 (2%) Strand=Plus/Plus Query 155005 TATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTC 155064 ||| | || ||||| |||||| | |||||||| | | | |||| || | || Sbjct 7021 TATATTGGATGGTTTGGTGTTTTGATGATCCCAACCTTATTGACTGCAACTTCTGTATTT 7080 Query 155065 ATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCT 155124 ||| | |||||||||||||| |||| ||||| ||||||||||||||||||| || | Sbjct 7081 ATTTTAGCCTTCATTGCTGCTCCTCTAGTAGATATTGATGGTATTCGTGAACTTGTTTCC 7140 Query 155125 GGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCA 155184 || ||| || | || || ||||| || || || ||||| || | |||| ||| || Sbjct 7141 GGGTCTCTACTTTACGGAAACAATATTATTTCGGGTGCCATTATTCCTACTTCTGCAGCT 7200 Query 155185 ATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAAT 155244 || || | ||||| ||||| || ||||||||||| | ||||||||||||| ||||| Sbjct 7201 ATAGGGTTGCACTTTTATCCAATATGGGAAGCAGCGTCGGTTGATGAGTGGTTATACAAC 7260 Query 155245 GGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT--- 155301 || ||||||| |||| | || | |||| | | || | ||||| | | Sbjct 7261 GGAGGTCCTTATGAACTAATTGTTCTAAACTTTTTACTTGGTGT---AGCATGTTATATG 7317 Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || |||||| || ||||| |||||||| ||||||||| Sbjct 7318 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGATGTTGCATAT 7377 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || || || | || || | ||| ||| | | || | | |||||||| Sbjct 7378 TCAGCTCCGGTTGCAGCGGCTACTGTTGTTTTCTTGATCTACCTAATTGGTCAAGGAAGC 7437 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||||| || |||||| ||||||| |||| |||| | || ||||| Sbjct 7438 TTTTCTGATGGTATGCCTCTAGGAATCTCTAGTACTTTCAACTTTATGATTGTATTCCAG 7497 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || || ||||| ||||||||||| || || | |||| | || ||||| |||||||||| Sbjct 7498 GCTGAGCACAACATCCTTATGCATCCATTTCGCATGTTAGGTGTAGCTGGTGTGTTCGAA 7557 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACT 155601 || ||||||| ||||||||| ||||| ||||| || ||| | ||| | ||||| Sbjct 7558 GGCTCTCTTTATAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACC 7617 Query 155602 ACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAAC 155661 || | | || ||| || | ||||||| ||| | ||||| |||||||||||||| Sbjct 7618 ACATAAAATGAATCTGCTAATGAGGGTTACAGATTCAGGCAAGAGGAAGAAACTTATAAT 7677 Query 155662 ATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAAC 155721 ||||| ||||||||||| || ||||| || | ||||| || ||||| ||||||||| Sbjct 7678 ATTGTAGCTGCTCATGGTTATTTCGGCCGATTGATCTTTCAATATGCTAGTTTCAACAAC 7737 Query 155722 TCAAGAAGTCTTCA-CTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGC 155780 || | |||| | ||||||| | ||||| |||||||| || | || ||| ||||| Sbjct 7738 TCTCG--TTCTTTACCTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACTGC 7795 Query 155781 TATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGT 155840 | | ||| | || ||||| |||||| | || |||||||| |||||||| |||||||| Sbjct 7796 TTTAGGTATTAGTACTATGGCCTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGT 7855 Query 155841 AGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCT 155897 || |||| ||| || || | ||| ||||| || || |||||| ||| | Sbjct 7856 TGA---TAGTCAAGGTCGTGTAATTCATACTTGGGCTGATATCATTAACCATGCTAACTT 7912 Query 155898 TGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 |||||||||||| ||||| || ||||| ||||| |||||||||| ||||| || ||| Sbjct 7913 TGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCAAGACCTAGCCGCT 7970 >seq1658 Length=355568 Score = 457 bits (506), Expect = 1e-123 Identities = 700/995 (70%), Gaps = 26/995 (3%) Strand=Plus/Minus Query 154978 TGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCT 155037 ||| ||||| |||| ||||| | ||| | || ||||| |||||| | ||||||||| Sbjct 187915 TGGATAACTAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATCCCT 187856 Query 155038 TGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGAC 155097 | | | |||| || | || ||| | |||||||||||||| |||| |||| Sbjct 187855 ACCTTATTGACTGCAACTTCTGTATTTATTATAGCCTTCATTGCTGCTCCTCTATTAGAT 187796 Query 155098 ATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCT 155157 |||||||||||||||||||| || | || ||| || | || || || || || || || Sbjct 187795 ATTGATGGTATTCGTGAACCTGTTTCCGGGTCTCTACTTTACGGAAAGAATATTATTTCG 187736 Query 155158 GGTGCTGTTGTCCCTAGTTCAAACGCAATTG---GTCTCCACTTCTATCCTATTTGGGAA 155214 ||| | || | |||| || ||| ||| | | ||||| ||||| || || ||| Sbjct 187735 GGTACCATTATTCCTACTTTT---GCAGTTGTAGGGTTGCACTTTTATCCAATATGAGAA 187679 Query 155215 GCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCTTCCAC 155274 || || ||||||||||||| ||||| |||||||||| |||| | || | ||| Sbjct 187678 GCGGCGTTGGTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACAC 187619 Query 155275 TTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACCGTCTT 155331 || | | || | ||||| | | |||||| ||||||||||| || |||||| Sbjct 187618 TTTTTACTTGGTGT---AGCATGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTA 187562 Query 155332 GGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCGCTGTA 155391 || ||||| |||||||| ||||||||| | || | | | || || ||||| Sbjct 187561 GGTATGCGCCCTTGGATTGTTGTTGCATATTTAGCTCTGATTGCAGCGGCTACTGCTGTT 187502 Query 155392 TTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTATCTCT 155451 ||| | | || || | |||||||| || | ||||| |||||||| | |||||| Sbjct 187501 TTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATGATGGTATGCCTCTAGAAATCTCT 187442 Query 155452 GGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACCCCTTC 155511 |||||||| |||| |||| | || ||| | || || ||||| ||||||||||| || || Sbjct 187441 GGTACTTTCAACTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCATCCATTT 187382 Query 155512 CACATGCTTGGAGTAGCAGGTG--------TGTTCGGTGGATCTCTTTTCTCTGCTATGC 155563 |||||| | || ||||| |||| | ||||| | ||||||| |||||||| Sbjct 187381 CACATGTTAGGTGTAGCTGGTGACCTGGTGTATTCGGCCGCTCTCTTTCTAGTGCTATGC 187322 Query 155564 ACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACT 155623 | ||||| ||||| | ||| | || | ||||| || || | || ||| || Sbjct 187321 ATGGTTCCTTGGTAATTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATCTGCTAATG 187262 Query 155624 ATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACT 155683 | ||||||| ||||| ||||| |||||||||||||| ||||| ||||||||||| || | Sbjct 187261 AGGGTTACAGATTCGGGCAAGAGGAAGAAACTTATAATATTGTAGCTGCTCATGGTTATT 187202 Query 155684 TCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCC 155743 ||| || | ||||| || ||| | |||||| |||| | | | ||||||||| Sbjct 187201 TCGCCCGATTGATCTTTCAATATACTAGTTTCAACTACTCTCGTTCTTTACACTTCTTCT 187142 Query 155744 TTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCAT 155803 | ||||| |||||||| || | || ||| | |||| | ||| | || ||||| | Sbjct 187141 TAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTATTGCTTTAGGTATTAGTACTATGGCCT 187082 Query 155804 TCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCA 155860 ||||| | || |||||||| |||||||| |||||||| || |||| ||| || | Sbjct 187081 TCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAAGGTCGTGTAA 187025 Query 155861 TCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGC 155920 | ||| ||||| || || ||||||| ||| |||||||||||||| ||||| || | Sbjct 187024 TTAATACTTGGGCTGATATCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAAC 186965 Query 155921 GTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 |||| ||||| ||||||||||| ||||| || ||| Sbjct 186964 GTAATGCTCATAACTTCCCTCTAGACCTAGCCGCT 186930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584813173644280