Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq1325 410 3e-110 seq1658 394 3e-105 >seq1325 Length=385796 Score = 410 bits (454), Expect = 3e-110 Identities = 686/985 (70%), Gaps = 5/985 (1%) Strand=Plus/Minus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 |||| |||| |||| ||||| ||||| ||||| || ||||| ||||||||||| | | | Sbjct 7966 GCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAA-AGTT 7908 Query 40593 TGTCTG-TTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 | || |||| | ||||||||||||| |||| || ||| | | || ||||| || Sbjct 7907 AGCATGGTTAATGATATCAGCCCAAGTATGAATTACACGACCTTGACTATCAACTACAGA 7848 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || || |||||||| | ||| || ||||||||| ||||| | | |||| Sbjct 7847 TTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAGTAAA 7788 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAA 40771 ||| || || | || || ||||| | | |||||| ||| | ||| |||||||| Sbjct 7787 CCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAG-GTAAAGAACGAGAGTTGTTGAA 7729 Query 40772 TGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGT 40831 |||||||||||| || | || || || ||||| || |||||||| || |||||||| Sbjct 7728 ACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATATTATAAGT 7669 Query 40832 CTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCG 40891 || | || || | || | || || | || |||||| ||| ||||| |||| Sbjct 7668 TTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGGTTTCCCT 7609 Query 40892 AATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGAC 40951 || | ||||| || | | || ||||||||| | | | || || | || || Sbjct 7608 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTTCGAACAC 7549 Query 40952 GCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGAC 41011 || || || || | ||| | ||||| ||||| || |||||||| || || ||||| || Sbjct 7548 ACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCTGGAATAC 7489 Query 41012 AAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTG 41071 || ||| |||||||| || | | |||||||| ||||||||||||||| || || || Sbjct 7488 AATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGCTTCCTTG 7429 Query 41072 ACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCAC 41131 ||| | | | || | ||||| ||| | ||| |||| | ||||||| ||||| || Sbjct 7428 ACCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAATATGCAAC 7369 Query 41132 AAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGC 41191 | ||||| || | |||||| || | | | ||||||||||| | ||| || Sbjct 7368 ATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACA 7309 Query 41192 TGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCA 41251 |||||| || | |||||||| | ||||| |||| ||| || || |||||||||| ||| Sbjct 7308 TGCTACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGTTGTATAACCA 7249 Query 41252 CTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 ||| || | | | |||||||| ||||| || || || | || || || ||| | Sbjct 7248 CTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAGCTGCAGAAGT 7189 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| | || || || ||||||||||| ||||| | || || |||||||| | || Sbjct 7188 AGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGGAAACAAGTTC 7129 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| |||||||| | || || || || ||||| | || || ||| | | Sbjct 7128 ACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAAATACA-GAAG 7070 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 | ||||| | ||| | ||| ||||| | ||||||||||| || | || || | ||| | Sbjct 7069 TTGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATAAAGACTGTTTT 7010 Query 41491 CGGTGCTAGTGACCCAGTTACAAAA 41515 ||| | || | | ||||||| || Sbjct 7009 TAGTGTTGGTTATCAAGTTACAGAA 6985 >seq1658 Length=355568 Score = 394 bits (436), Expect = 3e-105 Identities = 683/986 (69%), Gaps = 14/986 (1%) Strand=Plus/Plus Query 40533 GCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACTC 40592 |||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || | Sbjct 186934 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 186993 Query 40593 TGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGAC 40652 | ||||| | ||||||||||||| ||| || ||| | | || ||||| || Sbjct 186994 GCACGGTTAATGATATCAGCCCAAGTATTAATTACACGACCTTGACTATCAACTACAGAT 187053 Query 40653 TGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGC 40712 ||||| || || |||||||| | ||| || ||||||||| ||||| | | ||| | Sbjct 187054 TGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGCAATAAAC 187113 Query 40713 CATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAAT 40772 || || || | || || ||||| | | |||||||||| | ||| | |||||| Sbjct 187114 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTAGTTGAAA 187173 Query 40773 GAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTC 40832 || ||||||||| || | || | || ||||| || |||||||| || |||||||| Sbjct 187174 CTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATTATAAGTT 187233 Query 40833 TCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCTCCCGA 40892 || | || || || || | || || | || |||||| |||| ||||| |||| | Sbjct 187234 TCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGTTTCCCTA 187293 Query 40893 ATGATTG-AGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCACCAAAGAC 40951 || | || || || ||||| || ||||||||| | | | || | || || || Sbjct 187294 ATCAAACTAGAAATTACCAAGGAA-CCATGCATAGCACTAGAAAGAGAGCGGCCGAATAC 187352 Query 40952 GCCTG--------CAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || | | || || | ||| || ||||| ||||| || |||||||| || || Sbjct 187353 ACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGCTCAGCC 187412 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 | ||| |||| ||| |||||||| || ||| |||| ||| ||||||||||||| | || Sbjct 187413 TAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCATAAAAT 187472 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAAT-GGAGCTGT 41122 || ||||| | ||| || | ||||| ||||| ||| |||| |||| ||||| Sbjct 187473 CTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTG-CAATCAGAGCTAA 187531 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| |||| ||||| || | ||||||||| | | | ||||||||||| | ||| Sbjct 187532 ATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCACTCACGACC 187591 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || |||||| || | ||||||||| | ||||| |||| ||| || || ||||| Sbjct 187592 CATATAACATGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCACCGTT 187651 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||| |||||| || | | ||||| || ||||| || || || | || | | Sbjct 187652 GTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGCAACCCTACAAC 187711 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 | | | |||| | | || || |||||||| || ||||| | || || ||||| Sbjct 187712 TGCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGTAGAGACCCGGA 187771 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| ||||||| | || || || || ||||| || || || Sbjct 187772 AACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAGGCTATAATAAA 187831 Query 41423 -ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATA 41481 ||| | || ||||| | ||| | || ||||| | ||||||||||| || | || | Sbjct 187832 TACA-GAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATATAAA 187890 Query 41482 GGCGGTTGTCGGTGCTAGTGACCCAG 41507 | ||||| || |||||||| | |||| Sbjct 187891 GACGGTTTTCAGTGCTAGTTATCCAG 187916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143697258417942