Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20pallidicaule_20[genbank_20GCA_5F001687005.1_202016-07- 18] 3,013 sequences; 337,010,935 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq1325 511 5e-140 seq1658 468 6e-127 >seq1325 Length=385796 Score = 511 bits (566), Expect = 5e-140 Identities = 691/958 (72%), Gaps = 15/958 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 ||| || ||||| |||||||||| ||||| ||||| || |||||||||||||| |||| Sbjct 7970 AGCGGCTAGGTCTTGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAA 7911 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || ||||| ||| || ||||||||| |||| || || |||| ||||| Sbjct 7910 GTTAGCATGGTTAATGATATCAGCCCAAGTATGAATTAC---ACGACCTTGACTATCAAC 7854 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || | |||||| |||||||| | ||| | || Sbjct 7853 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGC 7794 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAG-TGAAGACTTCTTGAGT 67593 ||| ||||| || | || ||||| | ||||| | ||||||| | |||| | |||| Sbjct 7793 AGTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGGTAAAGAA--CGAGAGT 7736 Query 67594 TGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGT 67653 |||||||| ||||| || |||||||| || ||||| || ||||||||||| ||||| | Sbjct 7735 TGTTGAAACTAGCATATTGAAAGATCAATCGGCCGAAATAACCATGAGCAGCTACAATAT 7676 Query 67654 TGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAG 67713 | ||||| ||||| ||||| | ||| ||||||| | || || || | | || | Sbjct 7675 TATAAGTTTCTTCCTCTTGCCTGAATCTGTAACCCTCATTAGCAGATTCATTTTATGTGG 7616 Query 67714 TTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCAC 67773 |||| ||||| | | |||||| || | ||||| |||||||||||| | || || || Sbjct 7615 TTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTATAAAGAGAGCCTT 7556 Query 67774 CGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTT 67833 |||| ||||| ||||| || | ||| | ||||| |||||||||||||||||||| || | Sbjct 7555 CGAACACACCAGCTACACCTAACATGCGAAATGGATGCATAAGGATGTTGTGCTCAGCCT 7496 Query 67834 GGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAG 67893 |||| || | ||| |||| ||||||| ||| || || |||||||| | ||||| || Sbjct 7495 GGAATACAATCATAAAGTTGAAAGTACTAGAGATTCCTAGAGGCATACCATCAGAAAAGC 7436 Query 67894 AACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGT 67953 |||||||| | | |||| |||||| ||| | || || | || ||||| || | Sbjct 7435 TTCCTTGACCAATTAGGTAGATCAAGAAAACAACAGTAGCCGCTGCAACCGGAGCTGAAT 7376 Query 67954 ATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC-- 68011 |||| ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 7375 ATGCAACATCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCA 7316 Query 68012 -ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCAT 68070 | | ||||| | || | | |||| | || | |||| |||| || || | Sbjct 7315 TATAACATGCT---ACACCAAGTAAAAAGTTTAGAACAATTAGTTCATAAGGACCTCCGT 7259 Query 68071 TATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTG 68130 | || ||||||||||| | | ||||||||||| || ||||| ||||| | || || | Sbjct 7258 TGTATAACCACTCATCAACCGACGCTGCTTCCCATATTGGATAAAAGTGCAACCCTATAG 7199 Query 68131 CGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTG 68190 | ||| |||||| || ||||| ||||| || ||||| ||||| | || || || | Sbjct 7198 CTGCAGAAGTAGGAATAATGGCACCCGAAATAATATTGTTTCCGTAAAGTAGAGACCCGG 7139 Query 68191 CAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGA 68250 |||| |||| | |||||||| ||||| ||| |||| || |||||||| || | || | Sbjct 7138 AAACAAGTTCACGAATACCATCAATATCTACTAGAGGAGCAGCAATGAAGGCTAAAATAA 7079 Query 68251 AGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCAACATA 68308 | || | ||| | | ||| || |||||||| ||||| ||||| |||| ||| Sbjct 7078 ATACAGAAGTTGCAGTCAATAAGGTTGGGATCATCAAAACACCAAACCATCCAATATA 7021 >seq1658 Length=355568 Score = 468 bits (518), Expect = 6e-127 Identities = 695/981 (71%), Gaps = 26/981 (3%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 ||| || ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 186930 AGCGGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 186989 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || ||||||||| ||| || || |||| ||||| Sbjct 186990 GTTAGCACGGTTAATGATATCAGCCCAAGTATTAATTAC---ACGACCTTGACTATCAAC 187046 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| |||||||| || | |||||| |||||||| | ||| | || Sbjct 187047 TACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAGGCCATAGTACTAATACCTAAAGC 187106 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 | | ||||| || | || ||||| | ||||| | ||||||||| | | | |||| Sbjct 187107 AATAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTA 187166 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||||||| | ||| || |||||||| || |||| || ||||||||||| ||||| || Sbjct 187167 GTTGAAACTAGTATATTGAAAGATCAATCGGGCGAAATAACCATGAGCAGCTACAATATT 187226 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || Sbjct 187227 ATAAGTTTCTTCCTCTTGCCCGAATCTGTAACCCTCATTAGCAGATTCATTTTCTGTGGT 187286 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| || || | | |||| | || | ||||| |||||||||||| | || || | || Sbjct 187287 TTCCCTAATCAAACTAGAAATTACCAAGGAACCATGCATAGCACTAGAAAGAGAGCGGCC 187346 Query 67775 GAATA--------CACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGC 67826 ||||| |||| ||||| || | ||| || ||||| |||||||||||||||||| Sbjct 187347 GAATACACCAGGTCACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTGTGC 187406 Query 67827 TCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCA 67886 || || | ||| || | ||| |||| ||||||||||| || | |||||||| | ||| Sbjct 187407 TCAGCCTAGAATACAATCATAAAGTTGAAAGTACCAGAGATTTCTAGAGGCATACCATCA 187466 Query 67887 GAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGC-GAA--TGCTGCAGACACT 67943 | || |||||||| | || |||| |||||| ||||| | | |||||| || Sbjct 187467 TAAAATCTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCCGCTGCAATCA-- 187524 Query 67944 GGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCAC 68003 |||| | ||||| ||| |||||||| |||||||| |||||| || |||||||||| Sbjct 187525 -GAGCTAAATATGCAACAACAATCCAAGGGCGCATACCTAGACGGAAACTAAGTTCCCAC 187583 Query 68004 TGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAA 68060 | |||||| | | ||||| | || | | ||||| | || | |||| || Sbjct 187584 TCACGACCCATATAACATGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAA 187640 Query 68061 GGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGA 68120 || ||||| || || ||||||||||| | || ||||| || || ||||| ||||| Sbjct 187641 GGACCACCGTTGTATAACCACTCATCAACCAACGCCGCTTCTCATATTGGATAAAAGTGC 187700 Query 68121 AGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATG 68180 | || | | || |||||| || | ||| ||||| || || || ||||| | Sbjct 187701 AACCCTACAACTGCAAAAGTAGGAATAATGGTACCCGAAATAATATTCTTTCCGTAAAGT 187760 Query 68181 AGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAAT 68240 || || || | ||||||||| | |||||||| ||||| | | |||| || |||||||| Sbjct 187761 AGAGACCCGGAAACAGGTTCACGAATACCATCAATATCTAATAGAGGAGCAGCAATGAAG 187820 Query 68241 GCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAA 68300 || || || || || | ||| | | ||| ||| |||||||| ||||| ||||| Sbjct 187821 GCTATAATAAATACAGAAGTTGCAGTCAATAAGGTAGGGATCATCAAAACACCAAACCAT 187880 Query 68301 CCAACATAGATGCGATTGTCA 68321 |||| ||| | || || ||| Sbjct 187881 CCAATATAAAGACGGTTTTCA 187901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566925847351080